Penaeus vannamei (Pacific white shrimp): 113803588
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Entry
113803588 CDS
T06111
Name
(RefSeq) probable ATP-dependent RNA helicase DDX46 isoform X1
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
pvm
Penaeus vannamei (Pacific white shrimp)
Pathway
pvm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113803588
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvm03041
]
113803588
Enzymes [BR:
pvm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
113803588
Spliceosome [BR:
pvm03041
]
Complex A
U2 snRNP components
U2 related factors
113803588
Complex B
113803588
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
Motif
Other DBs
NCBI-GeneID:
113803588
NCBI-ProteinID:
XP_027210188
LinkDB
All DBs
Position
Unknown
AA seq
1070 aa
AA seq
DB search
MSRDSRTATRRRRSRSRSRSTERKRSRSRERERDRDRDRDRDRDRDRDRDRDRGRSRRSR
SRDRDRHRSRSRERRRSRSRERRSRSRDRSRSRERERDRRSRSRDKERDRKRSRSRSRER
ERDRKRNKRSKSHSPAKVKPAPPPPKPVEPPPPELKEEEETGLDFDPSKIDKEEAEKRLE
AEMQKRRERIEKWRAEKKKRELEAAKKEAEKGTLGANVPKVSIKAWSLEDDDEEEEGESR
ETEGKVEEEDEVDPLDAFMSGIQEEVRKINRVDMRGGVMKSTKPISVGTGEAGAKKPVII
MGVAKKVDAKKKGELMEQNQDALEYSSEEEGEDLKDTMASINSKGKKELVKIDHTAVEYV
PFRKDFYVEVPEIANMTKEEVDAYRAELEGIKIKGQGCPKPIKTWAQCGVSKRILEILKK
CNYEKPTPIQVQAIPAIMKGRDVIGIAKTGSGKTLAFLLPMFRHIVDQPPLEDTDGPIAI
IMTPTRELCMQIGKECKKFAKNNLRVCCVYGGTGISEQIAELKRGAEIIVCTPGRMIDML
AANSGRVTNLRRVTYVVLDEADRMFDLGFEPQVMRIIDNIQPGRQTVMFSATFPRQVEAL
AKKILTKPIEITVGGRSIVCKDVTQEVVMIEEDQKFLKLLEILGKFYEKGQTLIFVDKQE
SADSLFKDLLSHSYRALVLHGGVDQIDRDSTILDFKAGRVPIMVATSVAARGLDVKQLIL
VVNFDCPNHYEDYVHRCGRTGRAGNKGWAFTFITNDQPKFAGEVIRAMELSDTPVPEEIK
KFYEEYKQKMEGEGKKVKTGGGFHGKGYKFDESEANFASEKKKFEKAALGLADSDDEDIE
QDIDQQIESMLNTKRTVKEIKVTPMVAQSTGSTTTASIPVGGPSASDKLELARKLAQRIN
LQHNIGKEAKGASQQAAEFILKGGATMQPTISAKTVAEQMAQKLNNKLNYQPRDDREEEE
EATEETHHKYEEELEINDFPQQARWRVTSKEALAQISEYSEAGITVRGTFCPPGKNPPEG
ERKLFLAIESTSELAVSKAKAEIIRLIREELVKLRTSAGPVKAQGRYKVL
NT seq
3213 nt
NT seq
+upstream
nt +downstream
nt
atgtcacgggatagtagaactgcaactaggcgtaggaggtccaggagtcgctccagaagc
acagaacggaagagatcaagatctagagaaagagaaagggatagagatagggacagagat
agggacagggacagagaccgtgacagggatcgggaccggggaagatctcgcagatcccga
tcgagagaccgagatcgccacaggtcaagaagcagggaaaggagaaggtcaaggtccaga
gagaggcgctcaagatcacgtgatagatcgaggtccagggagagagaaagggacaggagg
tcacgttccagagacaaggagagagataggaagaggagcagaagcaggtcaagagaacga
gaaagagacaggaagaggaataagagaagtaagtctcactctcctgccaaggtaaaacct
gcaccacctcccccaaagcctgtggaaccaccaccacctgaactgaaggaggaagaggaa
actggtctagattttgatccctcgaagatagacaaggaggaagcagagaaacgtcttgag
gctgaaatgcagaaaaggagagagaggatagaaaaatggagagctgagaagaagaaacga
gagcttgaggcagctaagaaagaagcagagaagggaacactaggagctaatgttccaaaa
gtgtcaataaaagcctggagtttagaagatgatgatgaggaggaagagggagaaagtaga
gagacagaagggaaagtagaagaggaggatgaagttgatcctctagacgcctttatgtca
ggaattcaagaagaagtgagaaaaatcaatcgggttgatatgcggggaggtgttatgaag
tccaccaagcccatttcagtgggcacaggggaagcgggagcaaagaaacctgtcatcatt
atgggtgtggccaagaaagtggatgccaagaagaagggtgagttgatggagcaaaaccaa
gacgcgctagagtattcatcagaggaagaaggagaggacctcaaggataccatggccagc
atcaattccaaggggaaaaaggaactagtgaagattgaccatacagcagttgagtatgtt
cccttcaggaaggacttttatgtagaggttcctgagattgccaacatgacaaaggaggag
gtggatgcttacagagcggagctagaaggtattaagatcaaaggtcagggatgccccaaa
cccatcaagacatgggctcagtgtggggtcagtaagcgaatcttggagatattaaagaag
tgtaattatgagaaaccaacacctattcaggttcaggccatccctgcaatcatgaaaggc
agggatgtgattggcattgccaagactgggtcggggaagaccctggccttcctcctgccg
atgttccgccacattgtggaccagcctcccctcgaggacacagatggacccatagccatc
atcatgactccgactagggaattatgcatgcaaataggaaaagaatgcaaaaaatttgcc
aagaacaatctgcgagtttgttgtgtatatggaggcacaggaatttcagaacaaattgct
gagctgaaacgtggggcagaaatcattgtctgcactccgggccggatgattgacatgctt
gcggcgaacagtggccgagtgaccaaccttcggagagtgacatatgttgttcttgatgag
gcagatcgtatgtttgatctaggatttgagccacaggtcatgagaataatagataatatt
caaccaggccggcagacggttatgttctctgccactttcccgaggcaagtggaggcattg
gccaagaagattctcaccaagccaattgagatcacagtcggtggaaggtccattgtctgc
aaagatgtaacacaggaggtggtcatgattgaggaggaccagaagttcctgaaacttttg
gagatattggggaagttctatgagaagggccagactcttatcttcgtggacaagcaggag
agtgcggattcattgtttaaggatctccttagtcattcgtatcgtgcccttgtacttcat
ggaggtgttgatcagatagacagagacagcacaatcttagacttcaaggcaggaagggtg
ccaatcatggtagcaacctcagtggcagcaagaggtctcgacgtaaagcaacttattttg
gttgttaatttcgactgccctaaccattatgaagactatgttcatagatgtggtcgaaca
ggtcgggcaggtaacaagggatgggcctttacttttatcacgaatgaccagcctaaattc
gcgggagaagttatacgtgccatggagctctccgacacacctgtacctgaggaaataaag
aaattctatgaggagtacaagcagaagatggaaggggaaggcaagaaggttaagacaggg
ggtggcttccacggcaagggatacaagttcgacgagtccgaggctaactttgcatcggag
aagaagaagttcgagaaggcagctctgggtctggcagactccgacgacgaggatattgag
caggacattgaccagcagattgagagcatgttgaacaccaagagaactgtcaaggaaatt
aaagtgacgccaatggtagcacagtccacaggcagcacaaccacggcaagcattcccgtt
ggtggtccctctgcctcggacaagctagagctggcacggaaactagctcagcgtattaac
ctgcagcacaacatcggcaaggaggccaagggagcaagtcagcaagcagcagagttcatc
cttaagggaggagctacgatgcagcccaccatctctgcgaaaacggtggctgagcagatg
gcccagaaactgaataacaagctgaactaccagcctcgtgatgaccgcgaggaggaggag
gaggccacggaggaaacgcatcacaagtatgaggaggagctcgagatcaatgacttcccc
cagcaggccaggtggagagtgaccagcaaagaggccctggcccagatatccgaatattcc
gaagctggaatcacagtcagaggaaccttctgccctccgggtaagaacccgccagaaggt
gaacgcaaactgttcctggccattgaatccacctcagagctggcagtgtctaaggccaaa
gctgagatcatccgcttaatccgtgaggagctggtgaagctaaggacgagtgcaggacca
gtgaaagcacaaggaagatacaaagttttgtaa
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integrated database retrieval system
