Penaeus vannamei (Pacific white shrimp): 113810358
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Entry
113810358 CDS
T06111
Name
(RefSeq) uncharacterized protein LOC113810358
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
pvm
Penaeus vannamei (Pacific white shrimp)
Pathway
pvm03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pvm00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
113810358
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvm03021
]
113810358
03019 Messenger RNA biogenesis [BR:
pvm03019
]
113810358
Transcription machinery [BR:
pvm03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
113810358
Messenger RNA biogenesis [BR:
pvm03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
113810358
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
CFIA_Pcf11
DNA_pol3_a_NI
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
113810358
NCBI-ProteinID:
XP_027217844
LinkDB
All DBs
Position
Unknown
AA seq
1871 aa
AA seq
DB search
MTDLPTDVEVAEEYRSSLADLTMNSKPMITMLTMLAEENRSHAAVIVGVIEKHIQQASPN
HRLPVMYLIDSIMKNVGREYIKLFALNIITTFSCVFEKVDERTRKKLYELRHTWNEVFPK
SRLYGLDVKIQSIDPAWPLATGSSTTPQAVSKPNIHINPNIIKPGVVKGSPSLSSTGGHK
GQKDLEILKREEQLLALERQKLELEKKKILLEQSRHQKQEIKPAKVEPEKPPVKPAEDLS
ISSERRSEFLRSYKIKKKTQNKEEVQVGTTIHVDPRRVHQVLPVVAATGPVAPRDPRRAN
ESNKDPRIPHENTRDPRISEGSRDPRISSENARDPRLGSEISSNNIKPTKQSDTQVTSSR
DPRIVAKEREKDRLKDQRKSKKDSPTKTKKEKDIKPTKIDSRSSRSAHREKEKEKEKEKE
KEKDKEKKEKETSVSFSSSSRSSASHTKKPPEPVPPTEDVENTASFKSNRKSKRRTYKPR
EDSPEEVTSPSSSGKRSRADRDSDSDDSDHYQGNKPNPALYNKKAKKPEISSPTTTTAPA
TIGDTDYRQFTSPPKRPATSTTDENVSPPKKDCIMDEESPEAEQGLGLFSKKDVDYRQLL
PRPALLPTPVGPAFNITDQDDRNPNSRDPGVRDPTARDPLAPINPSDNQDPNIARAKGEL
GPPGVGSPLMGPLDPRMRKPSFNSPHAASWEKFREKNPEFKEYQRQASTSDSERRFSQEG
EDVEPPFFENHHGFSNRGRNFRGRGRGHRGMGVAGNIGDGRRKLYEEDEDSPGSPGRGEA
ARQNYQVIVKQAEEQMRRGEINLSQYNQLLTTVVTLVEQDKIREAQYRDRRHHRTPSHFP
DDGDWTGSSEGPLSGPTSVPPTSGPGPRSGPGPVLSSGSGAVPGPGPGSGPGSGPGQGPG
SGPGPGPVPGPGHGRGMRENHIRGGRGGYMGPNGPPSRGGLGGMGRGLPSGRGGPPGGPD
GEDGWGRGGMRGRGRRGRGGFIQDDRNWGGREGNLEDEWTGEADLPFVTEERLKAVARDS
ETRTIDIDKVPREIRTYGNTAVILLDWDDPRILTFGEGHCNIVFDEGQFLLPMRIGEDYK
EFKIAGETHRVKLGVPTKELMLDNRGYQCFFGGKPITVHLAGQPRTVRLDGKPPNVNIGP
VKNTDFVVGKIQLVIHARKVVPLYLDAKPQRFNIDGRPFIIKFVDSLRAVTINDVRFPVE
FGGLPISISVRGYRRFLRFTALPAGIIPGQVNIHGMESEGQKLSGVSGSPAQEQFSGEER
NMPVMKGPNRRSPPVGIPRKPPPAYPEKIKVGPHSNLGPDGVFLPQGPPPTQRPMQGAPP
QGPPPQGPPPVPPPQLGPTSGVLPLSNVNNQPTPQAIASLTDILSHPPPQVGIPPNAVPG
SYMTTQLPPAPNKTSQPVPQIPLDLNSLLENLTRTGLISTKVQDKSKAKKEEEQKKEEEE
EEKEKEEYERIPVEFMFNSENLRKRRKWLIEVIYRGMQCSSCGLRYPPEQTLQYSHHLDW
HFRQNRRQQESTKKANTRKFYFSIQDWLQYEEIEDVEERVPSMFENEGVVETMESEEAEE
PSVAVSSDSALGVCPTCHDTFSQFFHQETEEWRYRNAIQVDGINYHPACHQDTIRAEAAE
REAEERLKEMERTEEEDKTDEEAGDKGARPDDAEKTEKDSNDVSKDSQPPTADKLPGMSL
LSDLPIRIKEEPLDVEEYDVESDNQLSFPLDLNIKQEVKKEPEEEDEEDLIDKEPEEDDE
SSLLRNESTDEPMWDTPAVSVNAAETDIASSIDGNTELSTPEATPAGGLVTKIKFNVSKP
TLNINNNINNENKKDNANETLNSSINDEADEFVPPPFTVDYDLKPAFRDVELEEQPMEAR
GIEISGLCSIM
NT seq
5616 nt
NT seq
+upstream
nt +downstream
nt
atgacggatttgccgacggatgtggaggtggcagaggagtatcgttcgtcgctggcagat
ctgacgatgaactcgaagcccatgataacgatgctgacgatgttggccgaggagaaccgc
tcacacgcggcggtcatcgttggggtgatcgagaaacacatccagcaggcatcaccaaac
catagattgcctgtgatgtatttaatcgactccataatgaagaatgttggccgcgagtat
ataaaattgtttgcacttaatattattacaaccttcagctgtgtttttgaaaaggtggat
gaaaggacacgtaaaaaattatatgagctaaggcatacttggaatgaagtattccctaag
tcacgcttgtatggcttggatgtaaaaattcagtcaatagatccagcctggccattggcc
acaggatcttctacaacaccccaggctgtcagcaaaccaaatattcatattaatcccaat
attattaagcctggtgtagtgaaaggatcgccatctttatcttcaactggtggacacaag
ggccagaaggaccttgagatcctcaagcgggaggagcagctcttggcacttgagcgacaa
aagctggaattggaaaagaagaaaattcttttggagcagagtcgccatcaaaagcaggaa
ataaaaccagccaaagtggaaccagagaaacctcctgtcaagccagcagaggacctaagt
atatccagtgaacggcgctctgaattccttcgcagttacaagataaagaaaaagacccag
aataaggaagaagtgcaggtaggcacaaccattcatgttgacccaaggcgtgttcatcag
gttctgccagtggttgcggcaactggaccagttgctccacgtgacccgagacgggcaaat
gaaagcaacaaagatccaagaataccacatgaaaatactagggatcctagaatatctgag
gggtctcgtgatccaagaatttcaagtgaaaatgccagggatccgagacttggttcagaa
atttcaagtaacaatataaaaccaactaaacaaagtgatacacaagttacttcttcacga
gatccaagaatagtagccaaggaacgagagaaagatagattgaaagatcagcgaaagagt
aagaaagattcaccaactaaaaccaaaaaagaaaaagatatcaagcctacaaagattgac
tcacgatcatctaggtcagctcatcgggaaaaagagaaagaaaaagaaaaagaaaaggaa
aaggaaaaagacaaggagaagaaggagaaagaaacatcagtttcattttcatcttcctca
aggtcaagtgcaagccacacaaagaaacccccagagcctgtaccgcctacagaagacgta
gagaatactgcctcattcaagagcaaccgtaaaagtaagagaagaacctataaaccacgt
gaggatagtccagaggaagtcacttcaccatccagcagtgggaagcgatcccgtgcagat
cgagactcagattcagatgatagtgaccattaccagggtaataaaccaaaccctgcattg
tacaataagaaggctaagaagccagaaatcagcagccccacaacaacaacagctccagcc
accattggtgacactgactaccggcagttcacgtcccctccaaaacgccctgccacctct
accactgatgaaaatgtttctcccccaaagaaggattgtattatggatgaggagtctcct
gaagcagagcaaggacttgggttgttcagcaaaaaggatgttgactaccgacagttgctc
ccacggcctgccctccttccaactcctgttggaccagcttttaatatcacagatcaggat
gatcggaacccaaacagcagagaccctggtgtcagagaccctacagcacgagatccactg
gctccaattaatccttcagataatcaagaccccaatattgctcgtgctaagggagagctg
ggacctccaggtgtgggcagccccctcatggggccccttgacccacgcatgagaaaacct
agcttcaacagtccacatgcagcatcatgggagaagttcagagaaaagaacccggaattc
aaagaataccagcggcaagctagtacttcagactctgaacgacgcttcagtcaggaggga
gaagatgtagagccccctttctttgaaaaccaccatggattctcaaatcgtggcagaaac
tttcgaggcagagggagaggccacagaggcatgggcgtagcaggcaatataggagatggt
cgccgaaagctgtatgaagaggatgaagatagtccaggatcaccaggaagaggagaggcg
gctagacagaattatcaggttattgtgaaacaagcagaagagcaaatgcgtcgaggtgag
atcaatctcagtcaatacaaccagttgcttactactgttgtcactttagtggagcaagac
aaaattcgtgaagcacagtacagagacaggcgacatcacagaacaccttcacattttcca
gatgatggagattggacaggatctagtgagggtccactgtcagggcctacatctgtacct
cccacctcagggccagggccacgttcagggccaggaccagtactaagctcaggctcagga
gcagttccaggaccaggaccaggttcaggaccaggttcagggccagggcaaggaccagga
tctggaccagggccagggccagttcctggtccaggacatggaagaggaatgcgggagaat
catataagaggtggtcgaggaggttacatgggtcctaatggacctccatcaagaggtggc
cttgggggtatgggacgaggccttccaagtggacggggtgggcctccaggaggaccagat
ggggaagatggatggggcagaggaggcatgcgaggacgaggaagaagagggagaggagga
ttcattcaagatgaccgtaattggggtggcagggaaggaaaccttgaagatgaatggaca
ggtgaggcagatcttccatttgtcacagaagagcggctaaaggctgtagccagggattca
gagacaagaacaattgatattgacaaggtcccaagggaaatcagaacatacggtaacaca
gctgtcatcctcttggattgggatgatcccaggattctcacctttggagaaggtcactgt
aacattgtatttgatgagggccagtttttattacccatgagaataggggaagactataaa
gagtttaaaattgctggagagacacaccgtgtaaaactaggtgtcccaacaaaagaactt
atgttagataatagagggtatcagtgtttctttggtggaaaaccaataactgtacatctt
gcaggacagccaagaacagtgagattagatgggaaacctcctaatgtcaacataggacct
gttaaaaatacagattttgttgtagggaagattcaactagtaatccatgctaggaaagtt
gttcccctttatttggatgctaagccacaacgctttaatatagatggcaggccattcatc
attaaatttgtggattctctaagagctgtcacaattaatgatgttaggttcccagtcgag
tttggaggtttgccaatcagcatcagcgtacgtggttatagacgctttctacgtttcact
gctctccctgctgggattatcccgggacaggtaaacatacatggaatggaaagtgaagga
cagaaattgtcaggtgtttctggcagtccagctcaagaacagttttcaggtgaagaaaga
aacatgccagttatgaaaggacccaacagaagatcaccccctgttgggattcccaggaaa
ccccctccagcatatcctgaaaaaataaaagtgggcccacattcaaatcttgggcctgat
ggagttttcctacctcagggaccacctccaacgcagaggccaatgcagggagcaccacca
caaggtcctccacctcaaggcccccctcctgtgccacctccacagcttggtcccacttct
ggagtgttaccattatctaatgtaaacaaccaaccaaccccacaggccatagcctcactt
actgatattctcagtcatccaccaccacaggttggtattcccccaaatgcagtcccaggt
tcatacatgacaacacagcttccaccagctccaaataagacctctcaaccagttcctcaa
attccacttgatctgaattctctgctggaaaacctcactcgcactggcctcatatcaaca
aaagtacaagataagtccaaagcaaagaaagaggaagaacagaagaaagaagaggaggag
gaggagaaggaaaaggaagagtatgaacgaattccagttgaatttatgttcaattcggaa
aatcttcgaaagaggcgaaagtggcttattgaagtgatctatcgaggaatgcagtgttca
tcttgtggccttcgttacccaccagagcaaacactacaatattcccatcacttggactgg
cacttccgtcaaaacagacgccagcaagagtccacgaaaaaggcaaacaccagaaagttt
tacttctctattcaggactggcttcagtatgaggaaattgaagatgttgaggaaagagta
ccaagtatgtttgaaaatgaaggagtggttgaaaccatggaatctgaggaagcagaggag
ccaagtgtagctgtgtcatctgattcagcccttggtgtatgtcctacctgccatgacact
ttctctcagttcttccaccaagaaaccgaagagtggagataccgtaatgctattcaagta
gatggcattaattatcatccagcttgtcaccaagataccataagggctgaggcagcagag
cgtgaagcagaagaaagattgaaggaaatggagagaacagaggaagaagataagacagat
gaagaagcaggtgacaaaggggcacgtcctgatgatgcagaaaagactgagaaggacagc
aatgatgtgtcaaaggattctcagccaccaacagcagacaagttgccagggatgtcttta
ttgtcagacctgcccatcaggatcaaagaagagccactggatgttgaggagtatgatgtt
gaaagtgataatcagctgtctttcccgctggacttgaatatcaaacaagaggtgaagaaa
gaacctgaagaggaagatgaggaagatctgattgataaggaacccgaggaagacgacgaa
agcagcttattgcgcaatgagagcactgatgagcctatgtgggatacgcctgcagtatct
gtcaatgctgctgagacagacattgccagttccattgacgggaatacagaactttcgact
ccagaagccactccagctggtggccttgtgacaaaaatcaagttcaatgtgtcaaagcca
acgcttaatatcaacaataacataaataatgaaaataaaaaggataatgcaaatgaaact
ctcaactctagcatcaatgatgaagcagatgaatttgtgcctcctccattcactgttgac
tatgatctcaagccagcttttagggatgttgagctagaagagcagcctatggaagctcgg
ggtatcgagatatcaggattatgctcaattatgtag
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integrated database retrieval system
