Candidatus Planktophila vernalis: A7sIIA15_06100
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Entry
A7sIIA15_06100 CDS
T05319
Name
(GenBank) transcription-repair coupling factor (superfamily II helicase)
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pvn
Candidatus Planktophila vernalis
Pathway
pvn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pvn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
A7sIIA15_06100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pvn03400
]
A7sIIA15_06100
Enzymes [BR:
pvn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
A7sIIA15_06100
DNA repair and recombination proteins [BR:
pvn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
A7sIIA15_06100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
AAA_22
RecG_dom3_C
RIF5_SNase_2
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
ASY20408
UniProt:
A0A249KUC5
LinkDB
All DBs
Position
complement(1171444..1174914)
Genome browser
AA seq
1156 aa
AA seq
DB search
MRGLISSLPTQLEASHIVAPSPIYPFLLAARAADHPLLVVTSSSRSSEDLVNELRELHNN
VVEFPAWETLPHERLSPRSDTVAKRIQTLYELEKKQSAFPIVVTPVRGAIHRIIATLGKD
ALLELEIGKEQSLDKLVRHLSSLSYTRTDLVERRGEFAVRGGIVDLFLPLADYPIRIDFF
GDEIEDMSYFEVANQRTFKPVVGAIQIYPCRELLIMKEIRHRAIELKDSLPAAAELLEKI
SEGVSFEGMESLIPLLIDETETIISRMPSNTQIIFIDEERIKSRASDLLATNEEFLNASW
SNAAHGAVAPIHDGSGTYMSWEELSAEISEHKVATGSLSPFGSDLAEDTEFLDYNAIDPM
RGDIERTIEQLRNAVESHFTVVFATHGHGMLERYAGIFRSADLPVQINEKLLATPTKGTI
HLTTSIIAHGFESAAHQILFMTERDLTGSKGSVKDSERMPTKRKQAIDPLELRAGDFVVH
EQHGIGRYVELLERTVAGVTREYLIIEYAPAKRGQPGDRIFVPTDALEQVSKYVGGETPT
VHRIGSGEWQKAKGRARKAVRQIAGELIRLYAARTSSPGFAFSPDTPWQRELEDSFSYIE
TPDQLSTINDVKADMERPYPMDRIICGDVGYGKTEIAIRAAFKAVQDGKQVAVLVPTTLL
VQQHTKTFAERYAGFPLKVAGMSRFNSAKESKEVIDGLAAGTVDVVVGTHRILSNDVAFK
DLGLVIVDEEQRFGVEQKESLKKLRTTVDVLAMSATPIPRTLEMAVTGIREMSTITTPPE
ERHPILTYVGPAEEAQITAAIHRELLRDGQIFYLHNRVESIDRAAARLQELVPEARIRVA
HGQMSEGALEDVILAFWNRDFDVLVCTTIVESGLDIQNANTLIVERADMFGLSQLHQLRG
RVGRGRERAYAYFLYPADQPLSELAHDRLTTIAANTELGSGMRVALKDLEIRGAGNLLGG
EQSGHIADVGFDLYMRMVGEAVQDYKQGIIETEEKVSECKVELPINAHLSSEYVPGERLR
LDLYRRLADVKNPLDVESIRAELLDRFGELPEEAVALLGVAQLRAQAKIAKLTEVVIQGK
YLRLAPLTLPESRQLRLSRLYPGSLYKPATRTVLVALAKGPAWNPSQNEPEIVDTSLLAW
VVEAVNQLSEAPKVSS
NT seq
3471 nt
NT seq
+upstream
nt +downstream
nt
gtgcgtggcttaatttcttcgctgccaacgcagttagaggcatctcatatcgtggcacct
tcaccgatatatccatttctattggcagctcgcgctgccgatcaccctttacttgttgtt
acaagttctagccgcagcagtgaagatcttgttaatgaacttcgcgagctacataacaat
gttgttgagttccctgcatgggaaaccctgccgcatgagcgcttgagcccgcgaagtgac
accgttgctaagagaattcaaactctttatgagttagagaaaaaacaatctgcatttcca
attgttgttacacctgttcgcggtgccatccatcgcatcattgcaacattaggtaaggat
gcacttttagagttagaaattggtaaagaacaatctctggataaacttgttcgccacctt
tcatcactttcctatacacgcaccgatttagttgaacgccgaggcgaattcgctgtgcgc
ggtggaatcgtagatttgttcctaccgcttgcagattatccaatccgtatcgatttcttt
ggtgatgagattgaagatatgagctattttgaagtggctaatcaacgcacctttaagcca
gttgttggtgccattcagatttatccttgccgagaacttctcattatgaaagaaattcga
caccgtgccattgaactaaaagattctttgccggcagcagcagagctcctagaaaagatt
agcgaaggcgttagttttgaaggtatggaatcactcattcccttgcttattgatgagact
gaaacgattatttctagaatgccatctaacacccagattattttcatagatgaagagcgg
attaaatcaagagcttctgatttactcgcaacaaatgaagaattcttaaatgcgtcatgg
agtaatgcagcacatggggcagtagcaccgattcacgatggctctggaacatatatgtcg
tgggaagagttaagcgcagagatttctgagcacaaggtggccacaggttctctttcacca
tttggtagcgatttagccgaggacacagagttcttagattacaacgcgatagatccgatg
cgcggggacattgagcgcactattgaacagttacgaaatgctgtggaatctcatttcaca
gtggtctttgcaactcatggtcacggaatgcttgagagatatgcaggaatattcagatct
gctgatttaccagtgcagataaatgagaagttactagctacacctacaaaaggaacaatt
cacttaacaacctcaatcattgctcatggttttgaaagcgcagcccatcaaatccttttc
atgactgagcgagatttaactggcagtaagggaagcgttaaagattcagaacgcatgccc
acaaagcgaaagcaggctattgatccactagagcttcgtgctggtgattttgttgtgcat
gaacaacatggaattggacgctatgttgaattattagagcgcacagttgctggagtaacc
cgcgaatacttaatcattgaatacgcacctgccaagcgtggtcaaccaggtgatcgcata
tttgttccaacagatgcacttgagcaagtcagtaaatatgtcggtggtgaaacaccaacc
gtgcaccgtattggtagtggtgaatggcaaaaagctaagggccgtgcacgtaaagctgtg
cgccaaatcgcaggcgaactcattcgcctatatgcagcccgcacaagttctccaggcttt
gccttttcacctgacacaccttggcagcgcgaattagaagattctttttcatacattgaa
actcctgatcagctatcaaccattaatgatgtcaaggccgatatggagcgtccatatccc
atggatcgcatcatctgtggtgatgtgggttatggaaagaccgagattgcaattcgcgca
gcctttaaagcggtgcaagatggaaagcaagtagctgtccttgttccaacaacattatta
gtacaacagcacacaaagacatttgctgaacgttatgcaggctttccattaaaggttgca
ggaatgtctcgctttaacagcgccaaagagagcaaagaggttattgatggccttgctgca
ggaactgttgatgttgttgttggaacccaccgaattctctctaacgatgtggcctttaaa
gatttaggtcttgttatcgtggatgaagaacaacgctttggtgtggagcagaaagaatcc
ttaaagaagcttcgaaccactgtggacgtattagctatgtcggctacacctattcctaga
actcttgagatggcagtaactggcattcgtgaaatgtccacgattactactccgcctgaa
gagcgccacccaatccttacttatgtgggcccagcagaagaggcgcagataactgctgct
attcaccgtgaactcttacgtgatggacagattttctacttacacaatcgcgttgaaagc
attgatcgcgcagcagctaggttgcaagagttagtgccagaggcgcgtattcgtgtggca
cacggacagatgagtgaaggcgcactcgaagatgtgattctggctttctggaaccgtgac
tttgatgttcttgtttgcacaacaattgttgaaagtggtttagatattcagaatgccaac
acactcatcgttgaacgggctgacatgtttggtctgtctcaacttcatcagctacgtggg
cgtgtgggtcgtggccgtgaacgtgcttatgcctacttcttatatccagccgaccaacca
ctctcagagttagcccatgatcgattaacaactatcgcggcaaatactgaactgggttct
ggaatgcgtgtagcacttaaagatttagagattcgcggagctggaaatcttttgggcgga
gaacaatctggccacatcgcagatgttggttttgatttatacatgcgcatggtcggcgag
gcagtccaagattacaaacagggaattattgaaaccgaagaaaaggtttcagagtgcaaa
gtcgaacttccaattaatgcccatttatctagtgaatatgttccgggggagagattgcgt
cttgatctctatcgccgtttagctgatgtgaaaaatccgctagatgttgaatcaattcgc
gctgaactacttgatcgtttcggagaattacctgaggaagctgtcgcactgttgggagtt
gcccaacttcgagcacaagcaaagattgccaaattaactgaagtagttattcaaggaaaa
tacttgcgattagctcccttaactctgcctgagtcacgacagttgcgtctgtcacgttta
tatccaggttcactctataaaccggctactcgcaccgttttagttgcattagccaaaggc
cccgcgtggaatccgtctcagaatgagcctgagatagtggatacttctcttctggcctgg
gtcgtcgaggcagttaaccaacttagcgaagcaccgaaagtgagttcatag
DBGET
integrated database retrieval system
