Paenibacillus vortex: PVOR_28774
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Entry
PVOR_28774 CDS
T05385
Name
(GenBank) DNA polymerase LigD, polymerase domain protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pvo
Paenibacillus vortex
Pathway
pvo03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pvo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
PVOR_28774
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pvo03400
]
PVOR_28774
Enzymes [BR:
pvo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
PVOR_28774
DNA repair and recombination proteins [BR:
pvo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
PVOR_28774
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
EFU38606
UniProt:
A0A2R9SMK7
LinkDB
All DBs
Position
18454..19371
AA seq
305 aa
AA seq
DB search
MARTVKGTLNIEGQEIQITNPDKPLWPEVGITKAMYLQKLAAISPFLLRYCQGRLLTTIR
YPHGVQGESFYQKNAPEPLPPFVHTYVHENINYVLLNGLPELLWLGNLAALEFHPSLHLA
GSDQPCEWMIDLDPTLPEEPRIMEATAIVGNVLNSLGLNSVPKTSGATGVQIIVPIPAGV
TFDELRAVGQFVGQYVTEKFPKLFTIERLMKNRGDKIYFDYLQHYSGRTLAAPYTPRARK
LATVSTPLTWEEVHRDVSPTEFHLLNIVERLQEKGDLLQALPPQPIENVIRHLTSQGKNA
SKRKG
NT seq
918 nt
NT seq
+upstream
nt +downstream
nt
atggcccgtaccgtcaaaggaaccttgaacattgaaggtcaggagattcaaattaccaat
ccggacaaaccgctgtggccggaggtcggcattaccaaggccatgtatttgcaaaaactc
gcagcgatatcgcctttcctgcttcgatattgccagggaaggctgctgactaccatccga
tacccgcatggggtgcaaggcgaatcgttctatcagaaaaatgcgccggagccgctgcct
ccttttgtgcacacctatgtgcatgagaacattaattatgtgctgctgaatggattgccc
gagctgctctggctcgggaatctggctgcacttgagtttcatccgtcgctgcatttggca
ggcagcgatcagccctgcgaatggatgattgatctggatccgaccctgccagaggaaccc
cggatcatggaggcaactgcaatcgttggcaatgtgctgaactccttggggctgaactct
gtgccaaaaacctccggcgcaaccggggttcagatcatcgtcccgattccggcaggcgta
acttttgatgagcttcgcgcagtcggtcaattcgtaggccaatatgtgacggagaaattc
cctaagctgttcaccatcgagcggcttatgaaaaatcgcggggataaaatctatttcgat
tatctacagcactatagcggaagaacccttgctgctccttatacacctcgggcgcgcaag
cttgcgaccgtctctaccccgctgacctgggaagaggtccatcgggatgtttcgcctaca
gaattccacctgctgaacattgtagagcgtctgcaagaaaagggggatctgctgcaagca
ttgcctccgcaaccgatcgaaaatgtcatccgtcacctgacatcccaaggaaagaacgcg
tcaaaaaggaaaggctag
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