Pseudomonas veronii: PverR02_07975
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Entry
PverR02_07975 CDS
T04853
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pvr
Pseudomonas veronii
Pathway
pvr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pvr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PverR02_07975
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pvr03400
]
PverR02_07975
Enzymes [BR:
pvr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PverR02_07975
DNA repair and recombination proteins [BR:
pvr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PverR02_07975
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
UB2H
ERCC3_RAD25_C
AroM
Motif
Other DBs
NCBI-ProteinID:
AQY65004
UniProt:
A0A0R3AU97
LinkDB
All DBs
Position
complement(1754998..1758447)
Genome browser
AA seq
1149 aa
AA seq
DB search
MPVLRLPQLPAAAGKQHWGNLPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELSF
FAPDLPVLHFPDWETLPYDLFSPHQDIISQRIASLYRLPELVHGVLVVPITTALHRLAPT
KFLLGSSLVLDIGQKLDVEQMRTRLEASGYRCVDTVYEHGEFAVRGALIDLFPMGSKLPY
RIDLFDDEIETLRTFDPENQRSIDKVESIKLLPAREFPLQKDAVTRFKARFRERFDVDFR
RCPIFQDLSSGITPAGIEYYLPLFFDETSTLFDYLPQDTQVFSLPGIEQAAENFWSDVRN
RYEERRVDPSRPLLPPAELFLPVEDCFARLKNWPRVVASQEDVDAGSGRTRFPAQNLPNL
AIEAKASQPLEALSNFLGDFAGRVLFTAESAGRREVLLELLERLKLRPKTVDSWPDFVAG
KERLAITIAPLDEGLLLDDPALALIAESPLFGQRVMQRRRREKRADANNDAVIKNLTELR
EGAPVVHIDHGVGRYLGLQTLEIDNQAAEFLTMEYAEGAKLYVPVANLHLIARYTGSDDA
LAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFADPKADYATFSAGFA
FEETPDQQTTIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGKQVAILVPT
TLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVNAAVADLAEGKIDIVIGTHKLLSDDV
KIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIAT
PPARRLSVRTFVMEQNNSTVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAALVPEARI
AIGHGQMRERDLEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQ
LRGRVGRSHHQAYAYLLTPPRQQITGDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGEL
LGDGQSGQIQAVGFTLYMEMLERAVKAIRKGEQPNLDQPLGGGPEINLRLPALIPEDYLP
DVHARLILYKRIASATDEEGLKDLQVEMIDRFGLLPEPTKNLVRLTLLKLQAEQLGIKKV
DAGPQGGRIEFEAQTPVDPLVLIKLIQGQPNRYKFEGATLFKFMVPMERAEERFNTLEAL
FERLIPKSV
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgttctgcgtctaccgcaactccctgccgcggcaggtaaacagcactggggcaat
ttgcccggtgccgccctgagcctggccatcgccgaggctgccagcgcagccaagcgcttt
accctgctgcttaccgccgacagccaaagcgccgaacggctggagcaggagctgagcttc
ttcgcccccgatttaccggtgctgcattttcccgactgggaaaccctgccctacgacctg
ttctcgccgcaccaggacatcatttcccagcgcatcgccagcctgtaccgcctgccggaa
ctggtccacggcgtgctggtggtgccgatcaccacggcgctgcaccgcctggcgccgacc
aagttcctgctgggcagcagcctggtgctggatatcggccagaagctcgacgtggagcaa
atgcgtacacgcctggaagccagcggctaccgctgcgtcgacacggtgtacgagcacggc
gaattcgcggtgcgcggagcgctgatcgacctgttcccgatgggcagcaagttgccgtac
cgcatcgacctgttcgatgacgaaatcgagaccctgcgcaccttcgatccggaaaaccag
cgctccatcgacaaagtcgagtcgatcaaactgctgccggcacgggaattcccactgcag
aaagacgcggtgacgcgcttcaaggcgcgctttcgcgaacgcttcgacgtcgacttccgc
cgctgcccgatcttccaggacttgagcagcgggattacccccgccggtatcgagtactac
ctgccgctgttcttcgacgaaacctccaccctgttcgactacctgccccaggacacccag
gtgttctcgctgccgggcatcgagcaggcggcggaaaacttctggagcgacgtgcgcaac
cgctatgaagagcgtcgcgtcgatccgtcccgtcctttattaccgccggctgaactgttc
ctgccggtggaagactgcttcgcccgcctgaaaaactggccgcgcgtggtcgccagccaa
gaggatgtggacgcaggcagcggccgcacgcgcttccccgcgcaaaacctgccgaacctg
gcgattgaagccaaggccagccagccgctcgaagcgctgtccaacttcctcggcgatttc
gccgggcgcgtgctgtttaccgccgaatcggccgggcgccgcgaagtgctgctggagctg
ctggaacgcctgaagctgcgcccgaaaaccgtcgacagctggccggacttcgtcgccggc
aaagagcgcctggcgatcaccattgcgccgctggatgaaggcctgttgctggacgatccg
gccctggcgctgatcgccgaaagcccactgttcgggcaacgggtgatgcagcgccgtcgc
cgcgaaaaacgcgccgacgccaacaacgacgcggtgatcaaaaacctcaccgaactgcgc
gaaggcgcgccggtggtgcatatcgaccacggcgtcggccgctacctgggcctgcaaacg
ctggaaatcgacaaccaggccgccgaattcctcaccatggaatacgccgaaggcgccaag
ctgtatgtgccggtggccaacctgcacctgatcgcccgctataccggcagcgacgacgct
ctggcgccgttgcaccgcctgggttccgagacctggcagaaagccaagcgcaaggccgcc
gaacaggtgcgcgacgtcgccgccgagctgctcgacatctatgcccgtcgcgccgcccgc
gagggttatgcgttcgccgacccgaaagccgactacgccaccttcagcgccggcttcgcc
ttcgaagaaaccccggaccagcaaaccaccatcgaagccgtgcgcgccgacatgctcgcg
cccaagccgatggaccgcctggtgtgcggcgacgtgggcttcggcaagaccgaagtggcg
atgcgcgccgccttcatcgcggtgcatggcggcaagcaagtggcgatcctggtgccgact
accctgctcgcccagcagcactacaacagctttcgcgaccgctttgccgactggccggtg
accgtggaagtgatgagccgtttcaaatccgccaaggaagtgaacgccgccgtcgccgac
ctggcggagggcaagatcgacatcgtgatcggcacccacaagctgctgtcggacgatgtg
aagatcaagaacctgggcctggtgatcatcgacgaagaacaccgcttcggggtgcgtcag
aaagaacagctcaaggccctgcgcagcgaagtcgacattctgaccctcaccgccacgccg
attccgcgcacgctgaacatggcggtgtcgggcatgcgcgacctgtcgatcatcgccacg
ccaccggcgcggcgcctgtcggtacgcaccttcgtgatggagcagaacaacagcacggtc
aaggaagcgctgctgcgcgaattgctgcgcggcgggcaggtgtattacctgcacaacgat
gtgaaaaccatcgagaaatgcgccgccgacctcgccgcactggtgccggaagcacgcatc
gccatcggccacgggcaaatgcgcgagcgcgacctcgaacaggtgatgagcgacttctac
cacaagcgcttcaacgtgctgatcgcctcgaccatcatcgagaccggcatcgacgtgccg
agcgccaacaccatcatcatcgagcgcgccgacaagttcggcctggcacaactgcatcaa
ctgcgcggtcgcgtcggacgcagtcaccaccaggcctacgcgtacctgctgacgccaccg
cgccagcaaatcaccggcgatgcggaaaaacgcctggaagccatcgccaacacccaggac
ctgggcgccggctttgtgctggccaccaacgacctggaaatccgtggcgccggcgaactg
ctcggcgacggccagagcgggcagatccaggccgtgggcttcaccttatatatggagatg
ctcgaacgcgcggtgaaagccatccgcaagggcgagcaaccgaacctcgaccaacccctg
ggcggcggtccggagatcaacctgcgcttgccggcattgattcccgaagactacctgccg
gatgtccacgcgcgattgatcctgtacaagcgcatcgcctcggccaccgacgaagaaggt
ctcaaggacctgcaggtggagatgatcgatcgcttcggcctgttgccggaaccgaccaag
aacctggtgcgtctgaccctgctcaaattgcaggccgagcaactggggatcaagaaggtc
gatgccgggccgcagggcgggcgcatcgagttcgaagcgcagacgccggtggacccgttg
gtgctgatcaagctgatccagggccagcccaaccggtacaagttcgaaggggctacgctg
ttcaagttcatggtgccgatggaacgtgccgaagaacgcttcaataccttggaggcgctg
tttgagcgcctcatcccgaaatctgtttga
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