Phaseolus vulgaris (common bean): PHAVU_001G121400g
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Entry
PHAVU_001G121400g CDS
T03093
Name
(RefSeq) hypothetical protein
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
pvu
Phaseolus vulgaris (common bean)
Pathway
pvu03022
Basal transcription factors
pvu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pvu00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
PHAVU_001G121400g
09124 Replication and repair
03420 Nucleotide excision repair
PHAVU_001G121400g
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvu03021
]
PHAVU_001G121400g
03400 DNA repair and recombination proteins [BR:
pvu03400
]
PHAVU_001G121400g
Transcription machinery [BR:
pvu03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
PHAVU_001G121400g
DNA repair and recombination proteins [BR:
pvu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
PHAVU_001G121400g
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
C1_4
VWA_2
IBR
VWA
Motif
Other DBs
NCBI-GeneID:
18641169
NCBI-ProteinID:
XP_007162073
UniProt:
V7CV58
LinkDB
All DBs
Position
1:complement(34271130..34275002)
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AA seq
420 aa
AA seq
DB search
MNNVAERPLNGDVEDDDEDDGADLEAWERTYAEDRSWEALQEDESGLLRPIDTTAIYHAQ
YRRRLRTLAATAATARIQKGLIRYLYIVVDLSKAASERDFRPSRMAVIGKQVEVFIREFF
DQNPLSHVGLVTIKDGIANCITELGGSPESHINAMMGKLECSGDASLQNALELVLGCLNQ
IPSYGHREALILYSALSTCDPGDLMETIQKCKKSKIRCSVIGLAAEMFVCKHLCQETGGT
YSVALDESHFKELILEHAPPPPAIAEYATANLIKMGFPQRSAEGSVAICTCHEEAKAGGG
YTCPRCKVRVCELPTECRICGLTLISSPHLARSYHHLFPIVMFDEVSPSSQNDSSRSFSN
TCFGCQQSLFTQGNKPGLSVICPKCKQQFCLDCDIYIHESLHNCPGCESSRHSKSVTASQ
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgaataatgttgctgaaaggccacttaatggagacgtagaggatgatgacgaggatgat
ggtgcagaccttgaagcctgggagagaacttacgcagaagatagatcatgggaggctttg
caggaggacgaatctggacttctgcgccccattgatactacagccatttaccatgctcag
tatcgcaggcgccttcgtacccttgctgccactgcggctactgcacgaattcagaagggg
cttatacgatacctgtacattgtcgttgacctgtctaaggcagcttcagagagagacttc
cgaccaagcaggatggctgtgattgggaaacaggttgaggtatttatcagggaattcttt
gatcagaatccacttagtcacgttggtctggtgactataaaagatgggattgctaattgc
ataacagaacttggtggcagtcccgagtctcacatcaacgctatgatgggtaaactggaa
tgctcaggtgatgcctccttacaaaatgcactagagcttgttcttggatgtctaaatcaa
atcccatcgtatggtcatcgagaagctcttatcttatattcggctctcagtacgtgtgat
cctggtgatctcatggaaaccattcaaaaatgcaaaaagagtaaaataaggtgctcagtc
attggtcttgctgctgaaatgtttgtatgtaaacatctgtgccaggaaactggagggact
tattctgttgcgctagatgagtcccactttaaagagttgatcctggagcatgcaccacca
cctcctgcaatagcagagtatgccactgctaatttaattaagatgggtttcccacaacga
tcagctgagggttctgtcgcaatatgcacatgtcatgaagaggctaaggctggaggggga
tacacttgtccaagatgcaaagttcgtgtctgtgagcttcccactgaatgtcgaatctgt
ggattgacccttatttcttcaccccatttggcaaggtcataccatcatctatttcctatt
gtgatgtttgatgaggtctctccatcgtctcaaaatgactctagccgcagtttttccaat
acttgttttggttgtcaacaaagtctttttactcagggaaacaagcctggactttctgtc
atttgcccgaaatgcaaacaacagttttgccttgattgtgatatttacattcatgagagc
ttacataactgcccaggctgtgagagttccaggcattctaagtctgtaactgcttcccaa
tga
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