Phaseolus vulgaris (common bean): PHAVU_005G000800g
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Entry
PHAVU_005G000800g CDS
T03093
Name
(RefSeq) hypothetical protein
KO
K14328
regulator of nonsense transcripts 3
Organism
pvu
Phaseolus vulgaris (common bean)
Pathway
pvu03013
Nucleocytoplasmic transport
pvu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pvu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
PHAVU_005G000800g
03015 mRNA surveillance pathway
PHAVU_005G000800g
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvu03019
]
PHAVU_005G000800g
Messenger RNA biogenesis [BR:
pvu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
PHAVU_005G000800g
mRNA cycle factors
P-body specific factors
PHAVU_005G000800g
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
SRP-alpha_N
RRM_2
NiFe-hyd_HybE
Motif
Other DBs
NCBI-GeneID:
18629622
NCBI-ProteinID:
XP_007148607
UniProt:
V7BVL0
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Position
5:complement(59029..68122)
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AA seq
539 aa
AA seq
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MMEERKMKVRSEREKTKVVIRHLPPSLTQSDLFQHIDSHFDSRYNWFSFRPGNTSLKRQR
HSRAYIDFNSPHDVFDFAHFFHGHVFVNERGAQHKAIVEYAPSQRVPKPTTKKDGREGTI
YKDPDYLEFLKLIAKPHEHLPSAEIQLERKEAEQAGANKETPIVTPLMEYVRQKRAVDTG
MQASSAVAKVSRRSRAALPGKPGSGNTKRGSEKKKYVQKDNAKSAARKESKDKSAFIVVP
RREDLSAESSMKGISEIEALHGIEGPISGIPLSSDSGKKKILLLKGKQREIPSATEGTVK
QQIVQSGNSPISTPAKQNQRRENSGRLIRSILLNNESRQSQSITGTQHKIQILSSENGKR
PPRSFGSRSGLNDQHPNHDIAQVNSDGDSKRALDEKFVKRDPHGLGSGEKTEKRTRNKDR
PDRGVWTPLRRSDVSHAGSDYSSSSMAQPTLSNPESAEGELKENVTSGNRGSEFSASAGG
RGNPSIENGSQRNFARRGASYVVKDDGAVSISEGKPSKKSVGHSAHEKQVWVQKSSSGS
NT seq
1620 nt
NT seq
+upstream
nt +downstream
nt
atgatggaagaaaggaagatgaaggttcgttccgaaagggagaagacgaaagtggtgatt
aggcatttgcctccttctctcactcaatccgatctcttccaacacatcgactcacacttc
gattcacgctacaattggttctctttcagacccggcaacaccagcctcaagcgtcagagg
cattcccgagcctatatagacttcaattctcctcatgatgtgttcgactttgctcacttc
ttccatggacatgtttttgttaacgagagaggtgctcaacataaagctattgttgagtac
gccccttcccagcgtgttccgaagcctactaccaagaaggatggacgtgaagggaccata
tacaaagatcctgactatctggagttcctcaaactcattgcaaagccacatgaacatctt
cccagtgcagagatacaattggaaagaaaagaagctgaacaagctggggctaacaaggaa
acacctattgtcacacccttgatggaatatgttcgacagaaacgagctgttgacactggt
atgcaggcttcctcagcagtggcaaaagttagcagaagatccagagcggctttgcctggc
aagcctggctcaggcaatactaaacgaggatctgaaaagaaaaagtatgttcagaaggac
aatgccaagagtgctgctcgcaaagagtcaaaagataaatcagcctttattgtggttccc
cggcgagaggatctatcagctgaatcaagtatgaaaggaatttctgaaattgaagcattg
catggcattgaaggtcccatttctggaattccactgtcttctgactcaggaaagaaaaaa
atccttcttctgaaagggaaacagcgggaaattcccagtgccactgagggtacagtaaaa
cagcaaatcgtacaatctggaaattctcccatttcaactcctgcgaaacagaaccagaga
cgtgaaaatagtggaagattgatcaggagcatacttctaaataatgaatctcgtcaaagt
cagtctattactgggacacaacataaaattcaaattttaagctcagagaatgggaagaga
ccacctcgttcttttggctcaaggtctgggttaaatgatcaacatccaaatcatgatatt
gcacaagttaattctgacggggattctaaaagggctttggatgaaaaattcgtaaaaagg
gatcctcatggtttaggtagcggtgagaaaacagaaaagcgtactagaaacaaggataga
cctgatcgtggtgtttggacaccccttcgtcgttctgatgtttcacatgctggtagtgac
tactcgtcatcctcaatggcacaacctactctgtcaaatcctgaatctgctgaaggagaa
ctaaaagaaaatgttacttctgggaacaggggcagtgaattctctgcttctgcaggtgga
agaggcaatccttctattgagaatggttcccaaagaaattttgcacgccgtggagcttcc
tatgtagtgaaggatgatggtgcagtcagtataagtgaagggaaaccttccaagaaaagt
gttgggcacagtgctcatgagaagcaagtctgggttcagaaatcttcttcagggtcttaa
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