Phaseolus vulgaris (common bean): PHAVU_005G056500g
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Entry
PHAVU_005G056500g CDS
T03093
Name
(RefSeq) hypothetical protein
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
pvu
Phaseolus vulgaris (common bean)
Pathway
pvu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PHAVU_005G056500g
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvu03019
]
PHAVU_005G056500g
Messenger RNA biogenesis [BR:
pvu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
PHAVU_005G056500g
mRNA degradation factors
5'-3' decay
Decapping complex
PHAVU_005G056500g
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
18630179
NCBI-ProteinID:
XP_007149274
UniProt:
V7BW50
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All DBs
Position
5:complement(7399315..7407058)
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AA seq
828 aa
AA seq
DB search
MVDMDGFGTGGDVGGVPNTEDLRQLGNVSTGAVFDASQYAFFGSESAVQEVELGGLEDDD
DLLESNGEFIVNREEAEDLKSLSDIDDLSTTFWKLNKVVSEPKSTEFIGEQGSRQNSAAE
RAQKDDVLSWYEQNAYDNEGSLDGRRMSSQPHSSLSQLHEPKGLYRTSSYPEQPRQQQHH
QLQSGESAPNWFDQHMYGTETTHDGKRWSSQPHSTIAHLQETRPLHRTSLYPDKQQDFPH
FSSEPILVPNSSFTSYPPPSGRSQQASPSHNTGHLNIPYHAMGAQMALSPQNRSHFSNPA
LQLSGINHGPPFGGNMRQFPTGSPLSQRMQNQLVNQAGLYPGDHPNISSGLPMINKYDQM
LGLMELRDQMPKSAQIGRPNLRFSPQGFDTSGLRSNSGWPRFRSKHMTTEEIENILRMQL
AATHSNDPYVDDYYHQGCLAKKSSGAKLRHHFSPAQIRELPLRPSSNAEPHAFLQVDALG
RVPFSSIRRPRPLLEVDPPNSSNVGSPEQSISEKPLEQEPMLAARVTIEDGIYLLLDVDD
IDRFLQFNQLQDGGLQLKRKRQGLLEGLAASLHLVDPLGKNGRTVTLAAKDDFVFLRIVS
LPKGRKLLARYLQLLFPGGDLMRIVCMAIFRHLRFLFGNLPSDPAPAETINNLARVVSRC
IREMDLSSISACLAAAVCTSDPPPLRPLRSSAGDGASLILVSVLERATELLTDPHAASNY
NIANRSLWQSTFDEFFGLLTKYCVSKYDGVMQSFLIQGTPNMAAIGADAANAISKEMPVE
LLRASLPHTDDRQKKLLLDFAQRSIPVVGFNGNSGGHGHHVNSESVLS
NT seq
2487 nt
NT seq
+upstream
nt +downstream
nt
atggtggatatggatgggtttggaactgggggtgatgttgggggagttcccaacacagag
gatcttagacaactggggaatgtttccacaggtgctgtttttgatgcatcacaatatgca
ttttttggttcggagagtgctgttcaagaagttgagctgggagggttagaagatgatgac
gatttgcttgagtctaatggggagttcattgtcaacagagaagaggctgaggatttaaaa
tctctttctgacattgatgatctcagtactactttttggaagttgaacaaggttgtaagt
gaaccaaaaagcacagaatttattggtgaacagggatcgagacagaattctgcggctgaa
agggcacagaaggatgatgttcttagctggtatgaacagaatgcttatgataatgagggt
tctctggatggaagaagaatgtcatcgcaacctcattcttctctttctcagttacatgaa
ccaaagggcttgtacagaacatcctcatatcctgagcagccaaggcagcaacaacatcac
cagctccaatctggtgaatcagctcccaactggtttgatcagcatatgtatggtactgaa
actactcatgatggaaagcgatggtcatcgcaaccacattccacaattgctcacttacaa
gaaacgaggccattgcatagaacatctttatatcctgacaagcagcaggattttcctcat
ttttctagtgaaccaattttggtacctaactcttcatttacttcgtatcctccacccagt
ggtagatctcagcaagcttctccaagtcacaatacagggcacttaaacattccttatcat
gctatgggagctcagatggcactgtcacctcaaaatcgttctcatttctccaatcctgca
ttacagttgagtggaataaatcatgggcctccttttggtggaaacatgcgccaatttcct
actggttcccctcttagtcagagaatgcagaatcaattggtaaaccaggctgggttatat
cctggagatcatcccaatatttcctcaggtttacccatgattaacaagtatgatcagatg
cttgggctgatggaactgagggatcaaatgccaaaatcagctcaaataggtagaccaaat
ctccggttttccccacagggttttgatacaagtggccttagaagcaatagtggatggcct
agatttagatccaagcacatgacaactgaggaaattgagaatattcttagaatgcagctt
gcagcaacacacagcaatgatccatatgttgatgattattaccaccaaggttgtcttgca
aaaaagtcttctggtgctaaattgaggcaccactttagtccagctcaaataagggaactt
cctctacggccctcttctaatgctgaaccacatgcttttcttcaggttgatgctctaggg
agggttccattctcatcgattcgcaggccccgtcctctactggaagttgatcctccaaat
tcctctaatgtaggtagtcctgagcaaagcatttctgagaaaccactcgaacaggaacca
atgcttgcagctagggtcacaattgaagatggtatttatcttcttcttgatgtagatgat
attgatcgtttcctacagtttaatcagcttcaagatggtggtcttcagttaaaacggaaa
cgacagggtcttctggaaggacttgctgcctcacttcatttagttgatccactgggaaag
aatggacggacagttacacttgccgcaaaagatgactttgtttttctcaggatagtttct
ctacccaagggtcggaagctacttgctaggtaccttcaactgctttttcctggtggtgat
ctaatgcgcatagtctgtatggccatctttcggcatttaaggtttttatttggtaatctt
ccctctgatccagctccagcagagactattaataaccttgccagggttgtttcaagatgc
atccgtgaaatggatctaagttccattagtgcttgtctagcagcagctgtttgtacttct
gatccacctcccctacgtccactcagaagttcggccggagatggggcttcccttattcta
gtatccgtgcttgaaagggcaactgagcttctaactgatcctcatgctgctagcaattat
aatattgcaaaccgttcactttggcagtctacatttgatgaattctttggccttctgact
aagtattgtgtgagtaaatatgacggtgtaatgcaatcattccttatacaagggacacca
aatatggctgccattggtgcagatgctgctaatgctattagcaaggaaatgccagttgag
ctcttacgtgcaagtctacctcacacagatgaccgccagaaaaaactattacttgatttt
gctcagcgctctatacctgttgttggatttaatggtaattctgggggccacggtcaccat
gtgaactcggagtcagtgctgagttaa
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