KEGG   Phaseolus vulgaris (common bean): PHAVU_005G056500g
Entry
PHAVU_005G056500g CDS       T03093                                 
Name
(RefSeq) hypothetical protein
  KO
K12617  DNA topoisomerase 2-associated protein PAT1
Organism
pvu  Phaseolus vulgaris (common bean)
Pathway
pvu03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pvu00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PHAVU_005G056500g
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pvu03019]
    PHAVU_005G056500g
Messenger RNA biogenesis [BR:pvu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     PHAVU_005G056500g
  mRNA degradation factors
   5'-3' decay
    Decapping complex
     PHAVU_005G056500g
SSDB
Motif
Pfam: PAT1
Other DBs
NCBI-GeneID: 18630179
NCBI-ProteinID: XP_007149274
UniProt: V7BW50
LinkDB
Position
5:complement(7399315..7407058)
AA seq 828 aa
MVDMDGFGTGGDVGGVPNTEDLRQLGNVSTGAVFDASQYAFFGSESAVQEVELGGLEDDD
DLLESNGEFIVNREEAEDLKSLSDIDDLSTTFWKLNKVVSEPKSTEFIGEQGSRQNSAAE
RAQKDDVLSWYEQNAYDNEGSLDGRRMSSQPHSSLSQLHEPKGLYRTSSYPEQPRQQQHH
QLQSGESAPNWFDQHMYGTETTHDGKRWSSQPHSTIAHLQETRPLHRTSLYPDKQQDFPH
FSSEPILVPNSSFTSYPPPSGRSQQASPSHNTGHLNIPYHAMGAQMALSPQNRSHFSNPA
LQLSGINHGPPFGGNMRQFPTGSPLSQRMQNQLVNQAGLYPGDHPNISSGLPMINKYDQM
LGLMELRDQMPKSAQIGRPNLRFSPQGFDTSGLRSNSGWPRFRSKHMTTEEIENILRMQL
AATHSNDPYVDDYYHQGCLAKKSSGAKLRHHFSPAQIRELPLRPSSNAEPHAFLQVDALG
RVPFSSIRRPRPLLEVDPPNSSNVGSPEQSISEKPLEQEPMLAARVTIEDGIYLLLDVDD
IDRFLQFNQLQDGGLQLKRKRQGLLEGLAASLHLVDPLGKNGRTVTLAAKDDFVFLRIVS
LPKGRKLLARYLQLLFPGGDLMRIVCMAIFRHLRFLFGNLPSDPAPAETINNLARVVSRC
IREMDLSSISACLAAAVCTSDPPPLRPLRSSAGDGASLILVSVLERATELLTDPHAASNY
NIANRSLWQSTFDEFFGLLTKYCVSKYDGVMQSFLIQGTPNMAAIGADAANAISKEMPVE
LLRASLPHTDDRQKKLLLDFAQRSIPVVGFNGNSGGHGHHVNSESVLS
NT seq 2487 nt   +upstreamnt  +downstreamnt
atggtggatatggatgggtttggaactgggggtgatgttgggggagttcccaacacagag
gatcttagacaactggggaatgtttccacaggtgctgtttttgatgcatcacaatatgca
ttttttggttcggagagtgctgttcaagaagttgagctgggagggttagaagatgatgac
gatttgcttgagtctaatggggagttcattgtcaacagagaagaggctgaggatttaaaa
tctctttctgacattgatgatctcagtactactttttggaagttgaacaaggttgtaagt
gaaccaaaaagcacagaatttattggtgaacagggatcgagacagaattctgcggctgaa
agggcacagaaggatgatgttcttagctggtatgaacagaatgcttatgataatgagggt
tctctggatggaagaagaatgtcatcgcaacctcattcttctctttctcagttacatgaa
ccaaagggcttgtacagaacatcctcatatcctgagcagccaaggcagcaacaacatcac
cagctccaatctggtgaatcagctcccaactggtttgatcagcatatgtatggtactgaa
actactcatgatggaaagcgatggtcatcgcaaccacattccacaattgctcacttacaa
gaaacgaggccattgcatagaacatctttatatcctgacaagcagcaggattttcctcat
ttttctagtgaaccaattttggtacctaactcttcatttacttcgtatcctccacccagt
ggtagatctcagcaagcttctccaagtcacaatacagggcacttaaacattccttatcat
gctatgggagctcagatggcactgtcacctcaaaatcgttctcatttctccaatcctgca
ttacagttgagtggaataaatcatgggcctccttttggtggaaacatgcgccaatttcct
actggttcccctcttagtcagagaatgcagaatcaattggtaaaccaggctgggttatat
cctggagatcatcccaatatttcctcaggtttacccatgattaacaagtatgatcagatg
cttgggctgatggaactgagggatcaaatgccaaaatcagctcaaataggtagaccaaat
ctccggttttccccacagggttttgatacaagtggccttagaagcaatagtggatggcct
agatttagatccaagcacatgacaactgaggaaattgagaatattcttagaatgcagctt
gcagcaacacacagcaatgatccatatgttgatgattattaccaccaaggttgtcttgca
aaaaagtcttctggtgctaaattgaggcaccactttagtccagctcaaataagggaactt
cctctacggccctcttctaatgctgaaccacatgcttttcttcaggttgatgctctaggg
agggttccattctcatcgattcgcaggccccgtcctctactggaagttgatcctccaaat
tcctctaatgtaggtagtcctgagcaaagcatttctgagaaaccactcgaacaggaacca
atgcttgcagctagggtcacaattgaagatggtatttatcttcttcttgatgtagatgat
attgatcgtttcctacagtttaatcagcttcaagatggtggtcttcagttaaaacggaaa
cgacagggtcttctggaaggacttgctgcctcacttcatttagttgatccactgggaaag
aatggacggacagttacacttgccgcaaaagatgactttgtttttctcaggatagtttct
ctacccaagggtcggaagctacttgctaggtaccttcaactgctttttcctggtggtgat
ctaatgcgcatagtctgtatggccatctttcggcatttaaggtttttatttggtaatctt
ccctctgatccagctccagcagagactattaataaccttgccagggttgtttcaagatgc
atccgtgaaatggatctaagttccattagtgcttgtctagcagcagctgtttgtacttct
gatccacctcccctacgtccactcagaagttcggccggagatggggcttcccttattcta
gtatccgtgcttgaaagggcaactgagcttctaactgatcctcatgctgctagcaattat
aatattgcaaaccgttcactttggcagtctacatttgatgaattctttggccttctgact
aagtattgtgtgagtaaatatgacggtgtaatgcaatcattccttatacaagggacacca
aatatggctgccattggtgcagatgctgctaatgctattagcaaggaaatgccagttgag
ctcttacgtgcaagtctacctcacacagatgaccgccagaaaaaactattacttgatttt
gctcagcgctctatacctgttgttggatttaatggtaattctgggggccacggtcaccat
gtgaactcggagtcagtgctgagttaa

DBGET integrated database retrieval system