Patella vulgata (common limpet): 126812219 Help Entry 126812219         CDS       T09576                                  Name (RefSeq) DNA ligase 1 isoform X1   KO K10747   DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] Organism pvul  Patella vulgata (common limpet) Pathway pvul03030   DNA replication pvul03410   Base excision repair pvul03420   Nucleotide excision repair pvul03430   Mismatch repair Brite KEGG Orthology (KO) [BR:pvul00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     126812219    03410 Base excision repair     126812219    03420 Nucleotide excision repair     126812219    03430 Mismatch repair     126812219  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:pvul03032]     126812219    03400 DNA repair and recombination proteins [BR:pvul03400]     126812219 Enzymes [BR:pvul01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.1  DNA ligase (ATP)      126812219     6.5.1.6  DNA ligase (ATP or NAD+)      126812219     6.5.1.7  DNA ligase (ATP, ADP or GTP)      126812219 DNA replication proteins [BR:pvul03032]  Eukaryotic type   DNA Replication Elongation Factors    Other elongation factors     126812219  Prokaryotic type    Elongation factors (archaeal)     Other elongation factors      126812219 DNA repair and recombination proteins [BR:pvul03400]  Eukaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     Long Patch-BER factors      126812219    NER (nucleotide excision repair)     Other NER factors      126812219    MMR (mismatch excision repair)     Other MMR factors      126812219 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C Radical_SAM_N2 Motif Other DBs NCBI-GeneID:  126812219 NCBI-ProteinID:  XP_055954639 EnsemblRapid:  ENSPVUG00005007231 LinkDB All DBs Position 2:10928748..10985096 Genome browser AA seq 1041 aa AA seqDB search MQKAITRCISSTGMRNAPLGCLWWENVHRTHSRIRITVAPRHSVVLVPIIQRSFFTKPPA SKNREPSEKSPMRVKNNSPKKVDSPVKSDVDSPIKVRSKKRSRIIESDEDEENEVKPVEE TKIDEKLEVDKKLDLDEKSNKTEEKGITSKTKKKLDSFKNSKVADDEIKSPKVNKKSENL ESSKTPKSKTPEVITVQDEETDTSTVASPLKSPGGFPIRKTARKSMGLGSAVKRKSIADS PQSAPVESPAKRQKSESTVKTDEDLGIKPLPADTDDVEMKETETEEKSEIEIKNKIKEEI KEEIEDTKKEEVRSKKVKKEKGKSNSPGSKTSKKPVNDFFSPKAKKETKDDLKKETVVSP KSKQTSPKKEKNVEEKSNTGASVKDIDYNPKNSKYHPIDDACWKHKEKVPYLALAKTFEA IEDTSARLKMIEILSNFLRSVIVLSPDDLLCCIYLCLNQLAPAYEGLELGVGDTVLMRAI AQTTGRSMDHLKSALHEKGDLGLVAESSRSTQKMMFAPPKLTVSGVFSKLKDIANLTGNS SQSKKVDKIKGLFVACRQSEARFVIRSLSGKLRIGLAEQSVLTALGNASFLSPTGQEYPP EILDAGKGLAADTLKKKMENNALIIKTAYCELPSYDAIIPVLLNDGIEELPNKCRLTPGI PLKPMLAHPTKGVTEVLRRFENMEFTCEYKYDGERAQIHVLENGDICIYSRNSENNTSKY PDIISRMPKILNDDVKSCVIDSEAVAWDAVEKQIQPFQVLSHRKRKDADIANIKVQVCVY AFDLLYLNGESLVQQPFRKRRELLRSSFKETEGEFVFATSMIASNTEAIEEFLDLSIKGN CEGLMVKTLDVDATYEIAKRSHNWLKVKKDYLEGVGDTLDVVVIGGYKGTGKRTGWYGGF LLAIYDPDNEEFQSICKIGTGLKDEDLETHTKYFKEQVIEQPKPYYRWDNSHEPDEWFEA SQVWEIKAADLSISPTHRAAAGMVDPEKGISLRFPRFLRIRDDKKPEDATSASQVADMYR NQDQIQNQQKSAKTNDEEEFY NT seq 3126 nt NT seq  +upstreamnt  +downstreamnt atgcagaaagcaatcacgcgatgcatttcaagcaccggtatgcgaaatgcacctttggga tgtttatggtgggaaaatgtacacagaacacacagcagaatccgtataacggttgctccc agacattctgttgtattggtacctatcattcaaagatctttctttactaaaccaccagct tctaaaaacagagagccgtccgaaaaatcgcctatgagggtgaagaataattcaccaaag aaagtcgatagtccagtcaagagtgatgtagactcaccaattaaagtacgtagtaaaaag cgctcaaggattattgaaagtgatgaagacgaagaaaatgaagtaaagccagttgaagaa acaaaaattgatgaaaaattagaagttgataaaaaattagaccttgatgaaaaatccaac aaaactgaagaaaaggggattactagtaaaactaagaaaaagttagatagttttaagaat agtaaggtggctgatgacgaaattaaaagtcctaaagtaaataaaaagtcagaaaatttg gaaagtagcaaaacaccaaagtccaaaacacctgaagttataactgttcaggatgaggaa acagatacctcaacggtagcatcaccattgaaatctcctggtggatttcctattcgtaaa acagctcgtaagagtatgggattaggcagtgctgttaaaagaaagagtatagcggacagt ccacagtctgctccagtagagagtccagccaaacgacaaaaatctgaatccacagttaaa acggatgaagatttaggaataaagcctttaccagcagacactgatgatgttgaaatgaag gaaacggaaacagaagaaaaaagtgaaatagaaataaaaaataaaataaaagaagaaata aaagaagaaattgaagacacaaaaaaggaagaagttagatcaaaaaaggtgaaaaaggag aagggaaaatctaattcccctggtagtaaaacaagcaaaaaacctgtaaatgattttttc tcacctaaagctaaaaaagaaacgaaggatgatctaaagaaagaaacagttgttagtcct aagagtaaacagaccagtcccaaaaaagaaaaaaatgtggaagaaaaatctaatacaggg gcttctgttaaagacattgactataatcctaaaaactctaaataccatcctattgatgat gcttgttggaaacacaaagaaaaggtaccttatcttgccttggcaaaaacctttgaagca attgaagacacttcagccagattaaagatgatagaaatattaagtaattttctgcgttct gtgattgttttaagtcctgatgatctgttgtgttgtatttatctatgtttaaatcaactg gcacctgcctatgaaggattagaattaggtgttggtgatacagtattaatgagagctata gctcaaactacaggaagaagtatggatcatttgaaatcagcgttacatgagaaaggtgac ttaggattagttgctgagagcagtagaagtacacagaaaatgatgtttgctcccccaaag ttaacagtgtctggcgtatttagtaaattaaaagatattgctaatttaacgggaaattct tcacagtctaagaaagttgataaaataaaaggattatttgtggcatgtcgtcagtcagaa gctagatttgttatacgatcattgtcaggaaaactacgtattggtttagctgaacaatct gtattgacagcgttaggaaatgcatcatttttatctccaactggtcaagaatatccacca gaaatattagatgccgggaaaggtttggcagcagacaccctgaagaaaaagatggagaat aatgccttgataattaaaacagcctattgtgaattgccaagttatgatgctatcatccct gttttattaaacgatggaattgaagaattgcctaataaatgtcgacttacaccaggtata cctctaaaacctatgttagcccatcctaccaaaggtgtgactgaagtattacgaagattt gaaaacatggagtttacatgtgaatataaatacgatggagaaagagcgcagatccatgta ttagagaatggagatatctgtatatatagtagaaattctgaaaataataccagtaaatat cctgatataatcagtagaatgccgaaaatactcaacgatgatgttaaatcttgtgttata gactcagaagctgtcgcctgggatgctgtcgaaaaacaaattcaacctttccaggttctg agtcacagaaaaagaaaggatgctgatatagcaaatattaaagtacaggtctgtgtttat gcctttgatttgctgtatttaaatggtgaatcattagttcaacagccctttagaaagagg agagaactcttacgttcatcttttaaagaaacggagggggagtttgtttttgccacttcc atgattgcatctaatactgaagctattgaggaatttttagatctatcgattaaaggaaat tgtgagggtttaatggttaaaacattagatgttgatgctacgtatgaaatagctaaacga tctcacaattggttaaaagtaaagaaagattatttagaaggtgtgggtgatacattagat gtagttgttataggaggttataaaggtactggtaaaagaaccggctggtatggaggattt cttctggctatttatgatccagataatgaagaatttcagagtatttgtaagataggtaca gggttaaaggacgaagatctagaaacacatactaagtattttaaagaacaggttatagaa caacctaaaccatattataggtgggataactctcatgaaccagatgaatggtttgaagct agtcaagtgtgggagattaaagcagctgatttatctatatcaccaacacacagagctgct gctggcatggtggatccagaaaaaggtatatctctacgttttcctagattcttaagaatt cgagatgataaaaaaccagaagatgccacctcggcatcacaggtagctgatatgtatcgg aaccaggatcaaattcagaaccaacagaaatcagctaaaaccaatgatgaagaagaattt tattaa

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