Patella vulgata (common limpet): 126819479
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Entry
126819479 CDS
T09576
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
pvul
Patella vulgata (common limpet)
Pathway
pvul03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pvul00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
126819479
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pvul03400
]
126819479
Enzymes [BR:
pvul01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
126819479
DNA repair and recombination proteins [BR:
pvul03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
126819479
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
DNA_ligase_A_C
DNA_ligase_IV
BRCT_2
RNA_ligase
DUF664
Motif
Other DBs
NCBI-GeneID:
126819479
NCBI-ProteinID:
XP_050403534
EnsemblRapid:
ENSPVUG00005024751
LinkDB
All DBs
Position
4:complement(11446857..11467315)
Genome browser
AA seq
921 aa
AA seq
DB search
MATSSVDPATVASKVGFAELCGLLEKISKTQGNDKKKKVLKEFVDLWRNYHTELHADNPD
LPDSFYPAMRLLLPHLDKERLAYGIKEHMLAKLLIEVMCLGKESPDATKLLNFKAPKTAR
GDAGDFANVAFYVLKNRCPDKGTLTIQEVNDCLDAIANNNAAKKKEPVRKNILHLLKNLS
AVEQKWFIRMIVKELKVGLSQASMLSVYHADAEELYNVNNNLEKVCRLLRDPAVRAHEIG
ISIFSPFTPMLGERGSPEKVEKLMEGKMYFIETKFDGERMLLHKNDEAYKYFSRSGKEYT
HVFGSNPYDGSLTPYITNCFKPGVKSCILDGEMLGYHAETKTYGTKAEKFDIKSKELAET
KGYQACLQVFDILLYNDKVLTNLPLRERLKYIEKVFNPTEGRLLISSVKEAHNNQDCADA
LNEAIDGREEGIMVKNPESVYKPNTRKGGWFKIKPEYIGGLMDELDIVIVGGYFGVGHRS
GMMSHFMCAVAVPGEDGEKPTVFHSFCKVGSGYSKKELIDFNKKLADHWQVFDKRNPPDC
LQLASGFKEKPDAWIHPSKSCIVQVKAAEITDSDKYRTGCTLRFPRVECFRDDKPWFECL
TTTELEELRQKSGGKLAGSRYELGDAEPVKKKRKVVSRVVRPTVGSRFKAIDTSNITQIS
KMLEGKEICIINGSSDWSKSELEKKVVEFGGTITQNPDTSTFCVLAEKIAVRVNNLIKCD
LYDIVKVSWFVRCINGEKWIPWTPGDMIHTSPASLRKFKLDYDEYGDSYTEDTTEDQLQE
VFNNMKELSDDDVIEGKDIAAIEDEYFPDDSPYGLFRTCRIYVDNNLVLGDNSTKIPNSS
LDLLALELRFFGAVLSEKLDDHVSHVLVDKSDFSRVGQLREVRRRKSRKFHIVNEDWMRS
CLEEGEITNERKYEPDSVVST
NT seq
2766 nt
NT seq
+upstream
nt +downstream
nt
atggcgacttcttctgtggatccagcaaccgtggcgtccaaagttggatttgcagagttg
tgtggtttgttagaaaaaattagcaaaacccaaggaaatgataaaaagaagaaagttctg
aaagagtttgtagatttgtggagaaattatcacaccgaattacatgctgataatcctgat
ttgcctgattccttctacccagcaatgagactgttattacctcatttagataaagaaaga
ctggcgtatggtattaaagagcatatgctagccaagctgttgattgaagtcatgtgttta
ggaaaagaaagtcctgatgctacaaagctgctgaattttaaagctcctaaaacagctaga
ggggatgctggagattttgctaacgtagctttttacgtcttaaagaaccgatgtccagat
aaaggtacgttaaccatacaggaagtcaacgattgtctagatgccattgcaaataataac
gcagccaagaaaaaggaaccagttcgtaaaaatattctccatcttttgaagaatttatca
gccgtggaacagaagtggttcataagaatgattgtgaaggagttaaaagttggtttgagt
caggcgtccatgttgtcggtatatcatgcagatgctgaggaattatataatgtaaacaat
aatttagaaaaggtatgtcggttattacgagatccggctgtacgagctcatgaaattgga
atatcaatcttctcaccatttacaccaatgttaggtgaacgaggttctccagaaaaggtg
gagaagttgatggagggtaaaatgtattttatagaaacaaaatttgatggtgagagaatg
ttactacacaaaaacgatgaggcttataaatatttctctagaagtggtaaagagtacacc
catgtatttggaagtaatccgtacgatgggtcgttaacaccatatatcaccaactgtttt
aaaccaggagttaaatcttgtatattggatggagagatgttgggatatcatgcagaaact
aaaacatatggaacaaaagcggaaaagtttgatattaaatctaaagaacttgcggagaca
aagggatatcaagcgtgtctacaagtatttgatatattattatataatgataaagtttta
accaatctacctcttcgtgaacgattaaaatacatcgagaaagtttttaatccgacagaa
ggaagactgttaatcagtagtgttaaagaggctcacaataatcaagattgtgccgatgcc
ttgaacgaggccatagatggtagagaggaaggcatcatggttaaaaatccagaatctgtt
tataaacctaatacacggaagggtggctggtttaaaattaaacctgaatatatcggagga
ttgatggatgaactggacattgttattgttggaggatatttcggtgtaggtcatagatca
gggatgatgtcacattttatgtgtgctgtggctgtccctggggaagatggtgagaaacca
accgtttttcattcattttgcaaggtggggtcaggatattccaagaaagaattaatagat
ttcaataagaagttggctgatcattggcaagtttttgataaaagaaatcctccggattgt
ctacaactggcatcaggattcaaagagaaaccagatgcatggatccatccatccaagtct
tgtattgtgcaggtaaaagctgccgagataacagacagtgataaatatcgtacaggttgt
acattacgatttcctcgtgttgaatgtttccgtgatgataaaccctggttcgaatgttta
acgacgacagaattggaggaactcagacagaaatcaggaggaaagttggctgggtccaga
tatgaactaggagatgcagaacctgtgaagaagaaacgtaaagttgtatcgagagttgtc
cgccctactgttggatcacgatttaaagctattgatacatccaacatcacacagatatct
aagatgttagaaggtaaagaaatttgtataatcaatggatcatcagattggtcaaaatct
gagttggagaagaaagtagtcgagtttggtggaactatcactcaaaatccagatacatct
acgttttgtgtgttggccgagaagattgccgtacgggtaaacaatcttatcaaatgtgat
ctttatgacatcgtgaaggtcagctggtttgtcagatgtataaatggtgaaaagtggata
ccatggactcctggtgatatgattcacacatctccagcaagtttacggaagtttaaatta
gattacgatgaatatggtgatagctacactgaagacacgacagaggaccaactacaagag
gtgtttaataacatgaaggagttatcagatgatgatgtgattgaaggtaaagatatagct
gctatagaagatgaatattttccagatgattcaccatatggtctctttagaacatgcagg
atctacgtggacaataatctggtactgggcgacaattctacaaaaatacctaatagtagt
cttgatctactagctcttgaattgagattctttggtgctgttttatcagagaaactagat
gatcatgtctcccatgtgttagttgataaaagtgattttagtcgagttggtcagctacga
gaagttaggcgtagaaagagtagaaaattccatattgttaatgaagactggatgagatcg
tgtttagaagaaggagaaataaccaatgaaaggaaatatgaaccagatagtgttgtgtcc
acttaa
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