Plasmodium vinckei vinckei: PVVCY_1405960
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Entry
PVVCY_1405960 CDS
T08061
Name
(RefSeq) RNA polymerase II transcription factor B subunit 2, putative
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
pvv
Plasmodium vinckei vinckei
Pathway
pvv03022
Basal transcription factors
pvv03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pvv00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
PVVCY_1405960
09124 Replication and repair
03420 Nucleotide excision repair
PVVCY_1405960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvv03021
]
PVVCY_1405960
03400 DNA repair and recombination proteins [BR:
pvv03400
]
PVVCY_1405960
Transcription machinery [BR:
pvv03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
PVVCY_1405960
DNA repair and recombination proteins [BR:
pvv03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
PVVCY_1405960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Motif
Other DBs
NCBI-GeneID:
19958962
NCBI-ProteinID:
XP_008622660
UniProt:
A0A449C104
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All DBs
Position
PVVCY_14:complement(2169058..2171823)
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AA seq
921 aa
AA seq
DB search
MVKARKNIENMEIYDYMKEMDAKIWEYLFDDSLAHETIFNSLNELEQIIISRLLFIQQVV
SERAMRLWINPNFLKKLSESIKNLVDVKILVESETKKDNYNQYKINDRFRLTLLNKIYQN
DKNNIFIFNNNIKVQLNKEKELYEKKLFPTKEGILCYASTRWNTLLHFIASPNLNSYKYS
HSYSGSYASTYPHSSSIHGGIESPIKTEMGASIDGNNVHSYGGDYSYNNSLKSVKMEKGN
YYPTQTKKSKKNNEDSDEEYQPYGDEMYDEENYGNESFSQRRKYKNYGEYENTGNDSEYD
EDEGYDDETNEQYDNQTRNKYSQHYNDIENSTSGKYLNTRMGNKENVNLYDPNKKRDGRR
GRKKKKGVYAYKQNNLYYKSLQSRENNNMEEENNDFFFSSSNIKKEDLLACAPCGSLIEV
LKKKKFILDDVNNSSNIANNNNNNKTINMSREAFSWFLKDIRSRIISLVIEYLLIIDDGH
VTNIGKQNSAKHKKKSNSENATSNDGNEALPNSSISNTLINDYNNNDNMNNNVNGGEWGT
NNEDMNNVDGVNMSAKDTQDYITDLNKNSQKSEIYIKETLLLILSLTQCNIGQPIFLENL
TKAQKEFVDFGIHIGLFLKTHDSYIFITPYALLLTINNLNVENYISILNHLSVEKFCEES
GYNNNEDENIKKKAKLSEIYFHKYLLIQNTVRVKSEPLMDEDEKKDLKKFETKNYISQDI
TNHNIHSEKRLNENDNLEIGLIIQSNFKVYLYTSSILKINILSHLCELQARTPNMVVGIL
TRRSVLNAYNSDITADQIIKFLESYSHPGKTKLKSIIPINVITQLKLWEAERHRLTLEDS
IVFKNFEKEYLPHLYQQIVIWANSKNYLLHYTPWPKNTNSPEFDAWMKTEKYLCCIYESK
NEIIDKIKEIRGKLMKKRQAI
NT seq
2766 nt
NT seq
+upstream
nt +downstream
nt
atggtgaaggcacggaaaaatattgagaatatggaaatatatgattacatgaaggagatg
gacgcaaagatatgggaatatttatttgatgactcattagcacatgaaacaatatttaac
tcactaaatgaattagagcaaattataatatctagactattgtttattcagcaagtagtt
tcagaaagagctatgagattatggattaatccgaattttttgaaaaaattaagtgagagt
ataaaaaatttagttgatgttaaaatattagttgaaagtgaaacaaaaaaagataactat
aaccaatataaaataaatgatcgattcagattaacattattaaataaaatatatcaaaat
gataaaaataatatttttatatttaataataatataaaagtccaactaaataaagaaaaa
gaattatatgaaaaaaaattatttcctacaaaagaaggtattctatgttatgctagtaca
agatggaatactctcttgcattttattgcatcaccaaatttgaatagttataaatatagt
catagttatagtggtagttatgctagtacatacccacacagtagtagtatccatggtggt
atagaatcccctataaaaactgagatgggggcttcaatcgatggaaataatgttcattct
tatggaggagattattcttataataatagtttgaaaagtgtaaaaatggaaaaaggaaac
tattatcccactcaaactaaaaaaagcaaaaaaaataatgaagacagtgatgaagaatat
cagccatatggtgatgaaatgtatgatgaagaaaattatggtaatgaatcattttcacaa
agaaggaaatataaaaattatggagaatatgaaaacacaggaaatgattcagaatacgac
gaagatgaaggttatgacgatgaaacaaatgagcaatacgacaatcaaacacgaaataaa
tattcacaacattataatgacattgaaaatagtactagtggtaaatatttaaacacaaga
atgggtaataaagaaaatgtaaatttatatgatccgaataaaaaaagagatggaaggcga
gggagaaagaaaaaaaaaggagtatatgcatataaacaaaataatttatattataaaagt
cttcaaagtagagaaaataataatatggaagaagaaaataatgatttttttttttcttca
tcaaatattaaaaaagaagatttgttagcatgtgcaccatgtggtagtttgatagaagtt
ttgaaaaaaaaaaaatttatacttgatgatgtaaataatagttcgaatattgctaataat
aacaataataataaaacaataaatatgagtagagaagcattttcatggtttttaaaagat
ataagaagtagaataatatctttagttattgaatatttgctaataattgatgatgggcat
gtaacaaacataggtaagcaaaattcagctaaacataaaaaaaaaagtaattcagaaaat
gcgacttctaatgatggaaatgaagctttaccaaatagttccatctcaaatactcttata
aatgattataacaataatgataatatgaataataatgtgaatggaggagagtggggtact
aacaacgaagatatgaataatgtagatggtgtaaatatgagcgcaaaagatacacaagat
tatataacagatctaaataaaaattctcaaaaatcggaaatatatataaaagaaacatta
ttattaattttatcattaacccaatgtaatattggtcaaccaatatttttagaaaactta
acaaaagctcaaaaagaatttgtagattttggtatacatataggtttatttttaaaaaca
catgatagttatatatttataacaccatatgcattattattaacaataaataatttaaat
gttgaaaattatatatctatattaaatcatttatctgtagaaaaattttgtgaagaatct
ggttataataataatgaagatgaaaatattaaaaaaaaagcaaaattaagtgaaatatat
tttcataaatatttattaatacaaaatacggttcgtgtgaaaagtgagccattaatggat
gaggacgagaaaaaagatttgaaaaaatttgaaacaaaaaattatatttctcaagacata
actaatcataatatacattcagaaaaaagactaaatgaaaatgataatttagaaatagga
ttaattattcagagtaattttaaagtttatttatatacttcgtcaattttaaaaataaat
attttaagccatttatgtgaactacaagcaagaacaccaaatatggttgttggtatatta
acaagaagaagtgtgctaaatgcatataattcagatattactgctgatcaaattattaaa
tttttagagtcttattcacaccctgggaaaacaaaattaaaaagtataataccaattaat
gttattactcagcttaaattatgggaagctgaaagacatcgattaacattagaagattct
attgtttttaaaaacttcgaaaaagaatatttaccacatttatatcaacaaattgttatt
tgggctaatagcaaaaattatttattacattataccccttggccaaaaaatacaaattcc
cctgaatttgatgcatggatgaaaacagaaaaatatctatgctgtatatatgaatctaaa
aatgaaattattgataagataaaagaaattcgtggtaagttaatgaaaaagcgtcaagca
atatga
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