Pistacia vera (pistachio): 116114419
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Entry
116114419 CDS
T07386
Name
(RefSeq) general transcription factor IIH subunit 2 isoform X1
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
pvy
Pistacia vera (pistachio)
Pathway
pvy03022
Basal transcription factors
pvy03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pvy00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
116114419
09124 Replication and repair
03420 Nucleotide excision repair
116114419
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvy03021
]
116114419
03400 DNA repair and recombination proteins [BR:
pvy03400
]
116114419
Transcription machinery [BR:
pvy03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
116114419
DNA repair and recombination proteins [BR:
pvy03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
116114419
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ssl1
C1_4
VWA_2
Tfb4
RGS12_us1
Motif
Other DBs
NCBI-GeneID:
116114419
NCBI-ProteinID:
XP_031256422
LinkDB
All DBs
Position
Unknown
AA seq
424 aa
AA seq
DB search
MKNREGRRLNGEAEEDDEDEDDLNGGLEAWERSYADDRSWEALQEDESGLLRPIDNSAIY
HAQYRRRLRARSLSANASRIQKGLIRYLYIVIDLSRAASEMDFRPSRMAVVAKNVEAFVR
EFFDQNPLSQIGLVTIKDGVAHCLTDLGGSPESHIKALMGKLECSGDASLQNALDLTQAL
LNQIPSYGHREVLILYSALSTCDPGNIMETIQQCKKSKIRCSVIGLSAEMFVCKHLCHET
GGSYSVALDESHFKELILEHAPPPPAIAEFAIANLIKMGFPQRAAESSTSICSCHKEAKV
GVGYTCPRCKARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEVPPSNLNDPHIR
SQKTCFGCQQTLLNLGNKPGLCVACPKCKKYFCLECDIYIHESLHNCPGCESFRHLKPVA
AGEE
NT seq
1275 nt
NT seq
+upstream
nt +downstream
nt
atgaagaacagggagggaaggcgattgaacggagaagcagaagaagatgatgaagatgag
gatgatttgaatggaggcctcgaagcgtgggaaagaagttacgcagatgatagatcatgg
gaggctttacaagaggacgagtcggggctgcttagacccattgacaactcagcaatttat
catgctcagtatcgtcgccgccttcgtgcccgttctctttctgccaacgcttctcgaatt
caaaagggtctcattcgatatctctacattgttatcgatctttctcgggcagcttctgag
atggattttcgaccaagtcgaatggctgtggttgcaaaaaatgtagaggcttttgttagg
gagttttttgaccagaatcctctcagtcaaattgggctggtgaccataaaggatggggtt
gctcattgcttaactgatcttggtgggagccctgagtcacatataaaagctttgatgggt
aagttggaatgctcaggtgatgcttccctacaaaatgccttggatctcacacaagcactt
ctcaatcaaattccatcatatggtcatcgtgaagttctgatcttatattcagctctcagt
acttgtgatccgggaaatataatggagaccattcagcaatgtaagaaatctaaaataaga
tgttcagttattggcctctctgcagaaatgtttgtatgcaaacatctttgccacgaaact
ggtggatcatactctgtagccttggatgagtctcactttaaggagttaatactagagcat
gcacctccacctcctgcaatagcagaatttgcaattgccaatttgatcaagatgggtttc
ccacagagagcagcggagagctctacctcaatttgttcgtgtcataaagaagctaaagtt
ggtgtggggtatacttgtccaagatgcaaagcacgtgtctgtgagctacctactgaatgt
cggatttgtgggttgcaacttgtttcctcaccccatttggcaaggtcttatcatcatcta
tttccaattgcaccatttgatgaggtgcctccatcaaatctgaatgatccgcatatcaga
tcacaaaaaacttgttttggttgtcagcagactcttctgaatcttggaaataaacctggc
ctttgtgttgcctgcccaaaatgcaagaagtacttctgccttgagtgtgacatttatatt
catgaaagcttgcataattgcccaggttgcgagagctttaggcacttgaagcccgttgct
gctggtgaagaatga
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