Pistacia vera (pistachio): 116118356 Help Entry 116118356         CDS       T07386                                  Name (RefSeq) DNA ligase 1-like   KO K10747   DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] Organism pvy  Pistacia vera (pistachio) Pathway pvy03030   DNA replication pvy03410   Base excision repair pvy03420   Nucleotide excision repair pvy03430   Mismatch repair Brite KEGG Orthology (KO) [BR:pvy00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     116118356    03410 Base excision repair     116118356    03420 Nucleotide excision repair     116118356    03430 Mismatch repair     116118356  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:pvy03032]     116118356    03400 DNA repair and recombination proteins [BR:pvy03400]     116118356 Enzymes [BR:pvy01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.1  DNA ligase (ATP)      116118356     6.5.1.6  DNA ligase (ATP or NAD+)      116118356     6.5.1.7  DNA ligase (ATP, ADP or GTP)      116118356 DNA replication proteins [BR:pvy03032]  Eukaryotic type   DNA Replication Elongation Factors    Other elongation factors     116118356  Prokaryotic type    Elongation factors (archaeal)     Other elongation factors      116118356 DNA repair and recombination proteins [BR:pvy03400]  Eukaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     Long Patch-BER factors      116118356    NER (nucleotide excision repair)     Other NER factors      116118356    MMR (mismatch excision repair)     Other MMR factors      116118356 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C Motif Other DBs NCBI-GeneID:  116118356 NCBI-ProteinID:  XP_031260203 LinkDB All DBs Position Unknown AA seq 802 aa AA seqDB search MLTLRSCHPLLYKSLSRNLLKPTALFHLSFSSKPFSHKPKPLSISLNPQPKMSTPPSAFD FLMSKSRTAAAKKNPQSTSSPNKRKTTNVQNPKPPNSSADEIQENAEKPSLDLKEPISNQ HEPQDSVDAKQAQQPVDNCERPKKKPKVLSANERVAELKSKMVLLKEKPGDFDPKMVACW EKGERVPFIFLSLAFEMISNETGRILITNIVCNMLRTVMDTTPEDLVAVVYLAANKIAPA HEGLELGIGDASIIKALAEAYGRTDAQVKKQYKEMGDLGLVAKASRSSQSMIFKRPDALS ICKVFDAFRLIAKEAGKDSQEKKKNRIKALLVAATDCEPQYLIRLLQSKLRIGLAEQTLL AALGQAAVYNEQHSKPPPHVQSPLEEAVKIVKQAFSVLPVYDKIVSALLSGGVWDLPNTC SFTLGVPVGPMLAKPTKGVSEIINKFQDMEFTSEYKYDGERAQIHYMENGSVEIYSRNSE RNTGKFPDVALAISRLKKSSVKSFVLDCELVAYDREKQKILPFQILSTRARKNVSVSDIK VDVCIYAFDMLYVNGQPLLQEQLKVRRERLYDSFQEEPGFFQFATALTSSDLDEIQKFLD AAVDASSEGLIIKTLNRDATYEPSRRSHNWLKLKKDYIDSIGDSLDLVPIAAFHGRGKRT GVYGAFLLACYDSNNEEFQSICKIGTGFSEAVLEERSSSLRSKVIPKPKPYYRYADTINP DVWFEPTEVWEVKAADLTISPVHHAAIGVLDPDKGISLRFPRLIRVREDKNPEQASSSEQ VADMYNAQKHNQPNNQDDNEDD NT seq 2409 nt NT seq  +upstreamnt  +downstreamnt atgttaactcttcgttcatgccatcctctgctttacaaatctttatctcgcaatctcctg aaaccgaccgcactatttcatctctctttctctagtaaacccttctctcacaaaccaaaa cccctctctatctccttaaaccctcagcccaagatgtctactcctccctccgctttcgat tttctcatgtccaaatctcgcaccgccgccgccaaaaagaaccctcaatccacttcttct cctaataagcgtaaaaccacaaatgtccaaaaccctaaaccaccaaattcatcagctgat gaaattcaagaaaacgccgaaaaacccagtttagatctcaaggaacccatctcgaatcaa catgaaccgcaagattcagttgacgccaaacaggcccaacaaccggttgataattgcgaa agacccaaaaagaaacccaaagtattgagtgctaatgagagagttgcggaattgaagagt aaaatggtgttgttgaaggagaaaccaggtgattttgatcctaaaatggtggcgtgttgg gagaaaggagagagggtgccgtttattttcttgagtttggcatttgagatgatttcgaac gaaacggggcggattttgattactaatattgtgtgtaatatgttgaggactgtcatggat acgacacctgaggacttggtggcagttgtgtatttggcggccaataagattgcaccagct catgagggactggagctaggaattggggatgcttctattataaaggcgcttgcggaagca tatgggaggactgatgcccaggttaagaagcagtataaggaaatgggagatttgggcctt gttgccaaagcaagtcgctcatctcaatcaatgatattcaagcggccagatgcattatct atttgtaaagtttttgatgcttttcggctcattgctaaggaagctggaaaagatagtcaa gagaagaaaaaaaacagaatcaaggccctccttgttgctgccactgattgtgaacctcaa tatttgattcgtctacttcagtcaaagttgcgaattggactagcagagcaaactctctta gctgcattgggacaagcagctgtttataatgaacaacattctaaaccacctccacatgtt caatctcctttagaggaggctgtgaagattgttaaacaagcgttctctgtactacctgtt tatgataaaatagtctctgctcttcttagtggtggcgtgtgggatctaccgaatacatgc agttttacgctgggtgtcccggttggacctatgttagcaaaaccaaccaaaggggtgtct gagatcataaataagttccaggatatggaattcacatctgaatacaagtatgatggagaa cgtgcccagatacattacatggagaacggttctgttgagatatacagtcgaaattctgaa cgtaatactggaaagtttcctgatgttgctcttgcaatttcaagattaaagaaatcctct gtaaaatcatttgttctggactgtgaacttgttgcttatgaccgggagaaacagaagatt ttgccctttcagatccttagtactcgagctcgtaaaaatgtgtctgtgagtgacatcaag gttgatgtctgcatatatgcttttgacatgttgtatgtcaatggccaaccacttcttcag gagcaactgaaagttcgtagagagagactttatgactcatttcaggaagaacctggattt ttccagtttgcaacagctttaacatcgagtgatcttgatgaaatacaaaagtttcttgat gctgctgtagatgcaagttctgagggtttaatcatcaaaacactgaatcgagatgccaca tacgagccttcaaggcggtctcataactggctgaaactgaagaaagattatattgacagt attggagactcgctcgatttagtacctattgctgcatttcatgggcgtgggaaacgtaca ggtgtttatggtgcttttctattagcatgttatgacagcaacaacgaagaattccaaagc atttgtaaaataggcactggattttctgaagcagtgcttgaagaacgttcctctagtctc cgctctaaagtaattccgaaaccaaagccatactaccgatatgcagataccatcaatcca gatgtatggtttgagcccaccgaggtctgggaggtgaaagctgcagatttgactattagc cctgttcaccatgcagcaattggtgttttggatcctgataagggcatttcacttcgattt cctcgtctaattcgtgttcgggaagataagaatccagagcaagcctcgtcatctgagcag gttgcggacatgtataacgctcaaaaacacaatcaaccaaataatcaagatgacaatgaa gatgattga

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