Pistacia vera (pistachio): 116128575
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Entry
116128575 CDS
T07386
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 42
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
pvy
Pistacia vera (pistachio)
Pathway
pvy03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvy00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116128575
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvy03041
]
116128575
Enzymes [BR:
pvy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
116128575
Spliceosome [BR:
pvy03041
]
Complex A
U2 snRNP components
U2 related factors
116128575
Complex B
116128575
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
FeoA
Motif
Other DBs
NCBI-GeneID:
116128575
NCBI-ProteinID:
XP_031270174
LinkDB
All DBs
Position
Unknown
AA seq
1164 aa
AA seq
DB search
MEETKHELKRSHRERDRDKEKERNGERHRDKRDRESRRSEREKSTDSDDKYDKEKERDKH
RDRDKDRRNRDEGKDRSSDRKRDRDRDREKEREKEKEKEKEKEKEREEKREKAREKERER
EREREKRERDREERERERDRERERRERDREERDRERDREREKRERERDREREKERERRLR
DREKRRKVDSDDSDEDKERDRKRRRRDDDDYKERVREQSIRSNRHRDDSEDSPRKRVVED
DFDKKEKKTREEELEDEQRKLDEEMEKRRRRVQEWQELKRKKEESEREKRGEENVGEPKA
GRNWTLDGEDSDDEEVPQTGKFETDTDADEDANPSDKQVGDAMVVESESGNASPVLQNGD
AGEEEIDPLDAFMNSMVLPEVEKLNTAVELSMVDANGVDPKKKDRKGDRINGERPKKGSN
KSLGRIIPGEDSDSDYEDLENDEETVEDEDDDEFIKRVKKTKAEKLSIVDHSKIDYKPFR
KNFYIEVKEISRMTPEEVVALRKQLELKVHGKDVPKPIKTWHQTGLTSKIMETIKKLNFE
KPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVIAGDGPIGLIMAP
TRELVQQIHSDIKKFSKVMGIRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTS
GGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARK
VLGKPVEIQVGGRSVVNKDIAQLVEVRPESERFLRLLELLGEWYEKGKILIFVHSQEKCD
VLFKDMLRHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVIN
FDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDARYAPDLVKALELSEQVVPDDLKALA
DSFMAKVNQGLEQAHGTGYGGSGFKFNEEEDEKRKAAKKAQAKEYGFEEDKSDSEDEDEG
VRKAGGDISQQDALAKIAAIAAASKASASMPTPISSVQMLPSAGLPIALPGVLGLPIPGA
APVVPATGMSGVPNDGAARAAALAAAINLQHNLAKIQADAMPEHYEAELEINDFPQNARW
KVTHKETLGPISEWTGAAITTRGQYFPPSRATGPGERKLYLFIEGPTEQSVKRAKAELKR
VLEDFTNQALSLPGGAQPGRYSVV
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
atggaagaaacgaaacatgaattaaagaggagtcaccgggaacgtgacagggacaaagaa
aaggagagaaatggagagagacatagggataagagagacagggaaagtaggcgttctgag
agagagaaaagcactgattctgatgacaagtatgataaagagaaagagagagataagcat
agagacagggataaagacagaaggaacagggatgagggaaaagatagaagcagtgatagg
aagagagatagagacagggatagagagaaggagagggagaaagagaaagagaaagagaaa
gagaaagaaaaagaaagagaggagaagagggagaaggcaagggagaaagaacgagagagg
gaaagagaaagagagaagagggagcgtgaccgtgaagagagagagagagaaagggataga
gaaagggagaggagggaacgagacagggaagaacgagatagggagagagatagagagagg
gagaagagagagcgtgagagagatagagagagggaaaaagagagggagaggagattgagg
gaccgggagaagcgtcgaaaagttgatagtgatgatagtgatgaagacaaggaacgtgat
agaaagcggcgtaggagagatgatgatgattacaaggagagagtgcgtgaacagagcatt
agatcaaacaggcatcgggatgacagtgaagatagcccaagaaaaagagttgttgaggat
gattttgacaagaaagagaagaaaacccgagaagaagagctagaagatgaacagcggaaa
ttggatgaggaaatggaaaagcggaggaggagagttcaggagtggcaagagttgaagagg
aagaaggaagaatctgagagagaaaagcgtggggaagagaacgttggtgaacccaaggct
ggcaggaactggacccttgacggagaagattctgatgatgaagaagtaccccaaactggg
aaatttgagacagacacggatgcagacgaagatgctaatccttctgataaacaggttgga
gatgcaatggtggtagagtctgagagtgggaatgcttcacctgttttacaaaatggggat
gctggtgaggaagaaatcgatccacttgacgcttttatgaactctatggttttacctgaa
gttgagaagctaaacactgctgtggaattgtcaatggtggatgctaatggggtggaccca
aagaagaaggatcgaaagggtgataggattaatggtgagcggccaaagaaaggttcaaat
aagtctcttgggagaataattcctggtgaagattctgattcagattatgaggaccttgag
aatgatgaggaaacagttgaagatgaagacgatgatgaatttattaagagagtaaaaaag
acaaaagctgagaaattgtctattgttgatcactcaaagattgattacaaacctttcagg
aaaaatttctatattgaagtgaaggaaatttcaagaatgactcctgaagaggttgttgca
ctcaggaaacaactggaactgaaagtacatggaaaggatgtcccaaaaccaatcaaaacc
tggcaccaaactggacttacaagcaaaattatggagacgataaagaagcttaactttgaa
aagcctatgccaatccaagctcaggcattaccagtaattatgagtgggcgagattgcata
ggcgttgcaaaaacagggtctggaaagacccttgcctttgtgctgccgatgttgaggcat
atcaaggaccagccacctgtgatagctggcgatgggccaattggacttataatggctcct
acaagggagcttgtccagcagatccacagtgatatcaagaagttttccaaggtaatggga
atcagatgtgtgcctgtctatggtggttctggtgttgctcaacaaattagtgaattaaaa
cgagggactgagattgttgtctgtactccaggtcgaatgattgatatactttgcacaagc
ggagggaaaattaccaatttgagaagagtcacctatttggtcatggatgaagctgataga
atgtttgacatgggttttgagcctcagatcactcgaattgttcaaaatattaggccagat
cgtcaaactgtactattttctgctaccttccctcgtcaggttgaaattttggctcgcaaa
gttttgggcaaacctgtggagatacaagttggcgggagaagtgttgtaaacaaagatata
gcacagttggttgaagtgaggccagaaagtgagagatttttaagactgttagaactacta
ggtgaatggtatgagaagggaaaaattttgatatttgtccactcacaggaaaaatgtgat
gttttgtttaaggatatgcttagacatggttatccatgtctttcacttcacggggccaag
gatcagacagaccgtgaatccaccatttctgatttcaagagcaatgtctgcaatttgttg
attgcaactagtgttgcagctagaggtttagatgtgaaggagcttgaattagtgatcaac
tttgatgctccaaaccactatgaggattatgtacaccgtgttggtaggacaggccgagct
ggtcgaaaaggctgtgccattacatttatctccgaggaggatgcaagatatgcaccagat
cttgtaaaggcattggaactctccgagcaagttgttcctgatgacctgaaagctcttgct
gatagtttcatggcaaaagtgaatcagggacttgagcaagctcatggaacgggttacggt
ggaagtggttttaaatttaatgaagaggaggatgagaagaggaaagctgcaaagaaagca
caggcaaaagaatatggatttgaggaagacaagtcagattcagaagatgaagatgaaggg
gtgcggaaggcaggtggtgacatctcgcaacaagatgcgctggctaagattgctgctatt
gctgctgcctccaaagcctcggcttcaatgccaactcctatctcgtctgtgcaaatgctt
cccagtgctggactacccattgctctgccgggtgttcttggcctaccgatacctggagca
gcgccagttgttcctgctactgggatgtctggggtgcccaatgatggggcagctcgggca
gcggcattggcagctgccatcaacctgcagcataatttggcgaagattcaagctgatgca
atgcctgaacactatgaagcagaactggagatcaatgattttccccagaatgctcgatgg
aaagttactcacaaggaaacgttgggtccgatttcggaatggaccggagctgccattacc
accaggggtcaatattttccaccaagccgggccacaggaccaggggaacgcaaactctac
ttgtttattgagggccctactgaacagtctgtcaagagagctaaagcagaattaaaacgt
gttttggaagacttcacaaatcaggcattatcacttccaggtggagctcaaccaggcaga
tactcagttgtataa
DBGET
integrated database retrieval system
