Pistacia vera (pistachio): 116129688
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Entry
116129688 CDS
T07386
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
pvy
Pistacia vera (pistachio)
Pathway
pvy03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pvy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
116129688
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pvy03400
]
116129688
Enzymes [BR:
pvy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
116129688
DNA repair and recombination proteins [BR:
pvy03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
116129688
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
BRCT
DNA_ligase_A_C
PTCB-BRCT
RNA_ligase
DNA_ligase_IV
RTT107_BRCT_5
Motif
Other DBs
NCBI-GeneID:
116129688
NCBI-ProteinID:
XP_031271275
LinkDB
All DBs
Position
Unknown
AA seq
1167 aa
AA seq
DB search
MSKTEQTKVSVLVSLFNWIQKTKPPLKKRSKFRKFLVTYCDSSNYFSSLRLILPSLDRER
GSYGLKESVLATCLIDALGMSRDSPDAIRLINWRKGAGAANAGNFPLVAAEVLQRRQGMI
SGGLTIKELNDLLDCLASSENRAEKISVLSTLIKKTNAMEMKWIIMIILKDLKLGISEKS
IFHEFHPDAEDLFNVTCDLKLVCEKLKDRSQRHKRQDIEVGKAVRPQLAMRVSDAHAAWK
KLHGKEVIVECKFDGDRIQIHKNGSEIHYFSRNFLDHSEYGHAMSNIIVQNILVDRCILD
GEMLVWDTSLNRFAEFGSNQEIAKAARDGLDSDRQLCYVAFDILYVGDTSVIHQSLKERH
ELLKKVVKPLKGRLEILVPNGGLNTHRPPGEPCWSLMASNVEGVEKFFKETIENRDEGIV
LKDLGSKWEPSDRSGKWLKLKPEYIRSGSDLDVLIIGGYYGSGRRGGEVAQFLVALAERP
APNTYPRRFISFCRVGTGLSDDELDTVVTKLKPYFRKYEYPKRAPPGFYEVTNNSKERPD
VWIESPEKSIILSITSDIRTIRSEVFAAPYSLRFPRIDRVRYDKPWHECLDVQSFVELVH
SSNGTTKKEKDYGAPLDYKPKRAKSSRLGDRKNVSVVPSHFIQTDVSNIKGETLIFSNMV
FYFVNVPPTLSLDSLHKMVVENGGTFSMNLNKSVTHCVAAENRGIKYQAAKLRGDVIHYS
WVLDCCSQKKLLHLQPRYFLNLSDSSKTKLQEEVDEFSDSFYWDLDLADLKQLLSNIHRS
EDPTTVDYYRKKYCPEDKWSCFHGCCIYFYPLTESLKSDGEVLLELALRRMKLEVSFGGG
KVCNNLVNATHLVILSVPGTDMNFDSLIKGFTTTEKYLFGNKKLHVVGSQWLEDCLKREQ
KLEEDTYSLKPSGIEQSYSELCKRDLDMKEVSSELEILESQNIPSSLGREGKQRGSKVAS
ESSRLLSLPKREGIRKRGRPAGGSTKKGKMIVNPARRTRARVGKMPSKIYENESDRIDTS
SEKEIEEDTEMNEENHENHGMVGTEKLQTLKTEVLEESEPSHKGKATEQQVVEDVRKVDE
SVQAPDIEMVETNYSQDSEKPETLEVMVDPVQAMLLDMIPSLGAKKVETTSDPIREDEKP
SAGARAGPTKKKKVSYKDVASELLKDW
NT seq
3504 nt
NT seq
+upstream
nt +downstream
nt
atgagcaagactgagcaaacaaaagtgagcgttttggtgagtctcttcaactggatacag
aaaactaaacctccgctcaagaaacgctctaagtttcgcaagttcctcgtcacctactgc
gactcctccaattacttcagctctttgcgcctcatcctcccctctttagaccgagagcga
ggcagttatggcctcaaagagtccgtgcttgccacgtgtctcatcgacgccctcggcatg
tccagagactctccagatgctattcgccttatcaattggcgtaagggagccggagccgcc
aatgccggcaatttccccttggttgccgccgaggttctccagcgtaggcaaggaatgatt
tctggtggacttacaattaaggaattaaatgatctgcttgattgcttggcttcaagtgaa
aatagggcagagaagatttcagttctatctactctgattaagaagacaaatgcaatggaa
atgaagtggattatcatgataattcttaaagatctgaagttgggaattagtgaaaagagc
atttttcatgaatttcatccagatgccgaagacttgttcaatgtcacatgtgacttaaag
ttggtttgtgaaaagttaaaggatcgaagtcaacgacataaaaggcaggacattgaagtt
gggaaagctgtacgccctcagctagctatgagagttagtgatgcacatgctgcatggaaa
aagcttcatgggaaggaagtgattgttgagtgtaaatttgatggtgatcgcattcaaatt
cataaaaatggatcagagatacactacttctcgaggaactttcttgatcactctgaatat
ggacatgcaatgtctaacattattgtgcaaaatattttggttgacaggtgtatacttgat
ggtgaaatgttggtgtgggacacttctttgaatcggtttgctgagtttggttcaaatcag
gaaatagccaaggcagcaagggatggacttgacagtgatcgacagttgtgctatgttgca
tttgatattctttatgttggagatactagcgtcattcaccaaagcttgaaggaacgacat
gagcttcttaaaaaggtagtgaagcctttgaagggtcgtttagagattttagtacctaat
ggtggtcttaatactcaccgccctccaggggagccttgttggtcactcatggcttctaat
gtggagggtgttgagaaatttttcaaagaaaccattgaaaatagagatgaaggaattgta
ttaaaagaccttggttcaaaatgggaaccaagtgatcgaagtggaaagtggctaaagttg
aagcctgagtacatcagaagtggctctgacttagatgttttaatcataggaggatactat
ggctctggacgtcgtggaggagaggtagctcaatttttggtggccctggctgaacgtcca
gctccaaatacatatcctaggcgatttatctcattttgcagagtgggtactggtctttca
gatgacgagctagatacagttgtaaccaaattgaagccttattttaggaagtatgaatat
ccaaagagggcaccgcccggtttctatgaagttacgaataactcaaaagagagaccagat
gtttggattgagagccctgagaaatcaataatactttctataaccagtgatatccgtact
ataaggtctgaggtgtttgctgcaccctacagcttgagatttccacgtattgacagagtg
agatatgacaagccttggcacgaatgtcttgatgtgcagtcatttgtagaacttgtacat
tcaagtaacggtaccacaaagaaggagaaagattatggagccccactagattataaacca
aaacgtgccaagtcatctagattgggagacagaaagaatgtatctgttgttccttcacat
ttcattcagactgatgtttccaatattaagggtgaaaccttgatattctcaaatatggtg
ttttactttgttaatgttcctccaaccctctctcttgactccttgcacaaaatggttgtg
gagaatggtggcacattttcaatgaatctgaataagtctgttacccactgtgttgcagct
gagaacagagggataaaataccaggcagcaaagcttcgtggagatgttattcattactct
tgggtcttggattgttgttcacaaaagaagctcctccatttacagccaaggtacttcctc
aacctctctgattcttcaaagacaaagctacaagaagaagttgatgaattttctgactct
ttctactgggaccttgaccttgcagacctcaaacagctcttaagcaacattcatcgttcg
gaagatcccacaactgttgattattacaggaaaaagtactgtcctgaagacaaatggtct
tgctttcacggctgctgcatttacttctatcctttaacagagtctttaaaatctgatggg
gaagtcttgttggaacttgccttgaggagaatgaagctcgaagtttcctttggtggtggc
aaagtttgcaacaatcttgtgaatgctacccatttggtgatcttgtcagtacctggaact
gatatgaactttgattctcttataaaaggctttaccaccacagaaaaatatcttttcggg
aacaagaagttgcatgttgttggatcccagtggttggaagactgcttaaaaagggagcaa
aagttggaagaagacacgtacagcttgaagcccagtggaatagaacagtcatactctgaa
ttgtgcaaacgagacctagatatgaaagaagtctcttctgaattggaaattttggaaagc
cagaatataccatcgtcgcttggccgagaaggaaaacagagaggaagcaaagttgcttcg
gaaagttctagattactgtccttgccaaagagggaaggcataaggaaaagaggaagacct
gctggtgggagcacaaagaaagggaaaatgattgtcaacccagctcgaagaacaagggca
cgtgtcggaaagatgccttctaaaatatatgaaaatgaatcagacagaattgacacatct
tctgaaaaagaaattgaggaagatactgaaatgaatgaagagaatcatgaaaatcatgga
atggttggtacagagaaattgcaaacactgaagactgaagttttagaagaatcggaacca
tctcacaaaggaaaggcaactgagcaacaggttgtggaagatgttagaaaagtagatgag
tctgttcaagctcccgatattgaaatggttgaaacgaattatagccaagacagtgagaag
cctgaaacactggaagttatggttgatccggttcaagccatgttactggacatgattcca
agccttggagcaaagaaggttgaaactacatcagatccaattcgtgaagatgagaaacca
tctgcaggtgcccgtgcagggcctactaagaaaaagaaagttagctacaaggatgtcgca
agtgaattgctcaaggattggtag
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integrated database retrieval system
