Pistacia vera (pistachio): 116131680
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Entry
116131680 CDS
T07386
Name
(RefSeq) 30-kDa cleavage and polyadenylation specificity factor 30
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
pvy
Pistacia vera (pistachio)
Pathway
pvy03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pvy00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
116131680
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvy03021
]
116131680
03019 Messenger RNA biogenesis [BR:
pvy03019
]
116131680
Transcription machinery [BR:
pvy03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
116131680
Messenger RNA biogenesis [BR:
pvy03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
116131680
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
zf-CCCH
Torus
zf-CCCH_2
zf-CCCH_3
pP_pnuc_1
Motif
Other DBs
NCBI-GeneID:
116131680
NCBI-ProteinID:
XP_031273208
LinkDB
All DBs
Position
Unknown
AA seq
694 aa
AA seq
DB search
MEDTEGGLSFDFEGGLDAGPAVPTASNPVIQADSSLIANPNSSVPSAGGATTADPVAAGV
NHTGRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPVCRFFRMFGECREQDCVYKHT
NEDIKECNMYKLGFCPNGPDCRYRHVKLPGPPPSVEEVLQKIQQLSSYNHGNSNKFFQQR
NSFPQQTEKSQFPQGSHSVIQGATGRPSIVESTNVQQQQQQVQQPQQQGTLTQMQNLPNS
IPNQANRATPLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDTAENVIL
IFSVNRTRHFQGCAKMTSKIGGSVGGGNWKYAHGTAHYGRNFSVKWLKLCELSFHKTRHL
RNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDSELMAISVAAEAKREEEKAKGVNP
ENAGDNPDIVPFEDNEEEEEEESEEEDESFGSASQGRGRGRGMMWPPHMPLARGARPMPG
MRGFPPVMMGADGFSYGPVAPEGFPMPDMFGVAPRAFPPYGPRFSGDFTGPTGMMFPGRP
QTGGVFPANGFGMMMGPGRAPFMGGMGPNATNPRAGRPVGVPPMFPPPPSSSQNTGRSSK
RDQRAPNNDRNDRYSTGLDQGRGQEMAGPGGGLDDDTQYQQEGLKGHHEDQFGSGNFRND
ESESEDEAPRRSRHGEGKKKRRGSEGEAGNSSDH
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
atggaggacacagaagggggtctcagcttcgacttcgagggcggtctcgacgcgggtccc
gccgtccccaccgcctccaatcccgtcatacaagctgattcctccctcatagcaaacccc
aattcatccgttccttctgctggcggagctaccacggctgatcctgttgcggcgggggtt
aaccatactgggcggaggagtttccggcagacggtgtgccggcactggctacgtagcctt
tgtatgaagggtgacgcctgtgggttccttcaccagtatgacaagtctagaatgccggtt
tgtcggttctttagaatgtttggagagtgccgtgaacaagattgcgtgtataaacacact
aacgaagatatcaaagagtgtaacatgtacaagctggggttttgtccaaatggtcctgat
tgtcgctataggcatgtgaagttgcctggaccacctccttctgtggaagaagtccttcag
aagattcagcaattaagttcatacaatcatggcaactcaaacaaattttttcaacaacgg
aattcttttccccaacaaacagaaaaatctcagtttccacagggttcccattccgtcatt
caaggtgccacggggagaccttcgatagtggagtcgactaatgttcagcagcagcagcag
caagttcaacaaccccaacaacagggtaccctgacccagatgcaaaaccttcccaatagc
atacctaatcaggcaaacagagctacacccttgccccaaggaatatctaggtactttatt
gttaaaagctgcaaccgtgaaaatctggaattatctgtacaacaaggggtttgggcaact
cagaggagcaatgaagctaaactaaatgaagcctttgacactgctgaaaatgtgatttta
atcttctcagtcaatcgaactcgacacttccagggttgtgccaagatgacatcgaaaatt
ggtgggtctgtgggtggagggaattggaaatatgcacatggaactgcacattacgggcgg
aatttctctgtcaaatggttaaagttatgtgaactatcatttcacaagactcgccatttg
aggaacccatacaatgaaaacttaccagtgaagattagtagagattgtcaggagttagag
ccctctattggtgagcaattggcttccttgctttatctcgaaccagatagtgaacttatg
gctatatcagttgcagcagaagcaaaacgagaagaggaaaaagcaaagggagtcaatccg
gagaatgctggggataacccagacatcgtcccattcgaggacaatgaagaagaggaagag
gaagaaagtgaagaggaggatgagagcttcggatctgcaagtcagggcagagggaggggc
agaggaatgatgtggcctcctcacatgcctctagcacgtggggctagaccaatgcctggg
atgcgaggttttccgcctgttatgatgggtgctgatggattttcatacggacctgttgca
cctgagggttttccaatgccagatatgtttggtgtggctccccgtgcttttccaccatat
ggtcctaggttttctggtgattttacagggccaactggcatgatgtttcctgggcgacct
caaacagggggtgtgtttccagctaatggatttgggatgatgatgggtccaggtagagcc
ccttttatgggagggatggggcccaatgctacaaatcctcgagctggtcggccagttggt
gtgcccccgatgtttccacctccaccatcatcctctcaaaacactggccgttcttctaag
agagatcaaagggcaccaaataatgatcgcaatgacagatatagtacagggttagaccag
ggcaggggtcaagaaatggctggtccaggtgggggactggacgatgatacacagtatcaa
caagaaggattaaaaggacaccatgaagatcaatttggttctggaaacttcagaaacgat
gagagtgagagtgaggatgaggcaccaaggcggtccagacatggtgagggaaagaagaag
cggcgaggctcagaaggtgaggcgggcaacagttcagatcactag
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integrated database retrieval system
