Pistacia vera (pistachio): 116144018
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Entry
116144018 CDS
T07386
Name
(RefSeq) polyadenylation and cleavage factor homolog 4 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
pvy
Pistacia vera (pistachio)
Pathway
pvy03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pvy00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
116144018
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvy03021
]
116144018
03019 Messenger RNA biogenesis [BR:
pvy03019
]
116144018
Transcription machinery [BR:
pvy03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
116144018
Messenger RNA biogenesis [BR:
pvy03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
116144018
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
116144018
NCBI-ProteinID:
XP_031285324
LinkDB
All DBs
Position
Unknown
AA seq
1040 aa
AA seq
DB search
MESEKILQNPRASPSLAFSANINSKAMPNELAQKPPPPPTMMEKFRALLKQREEEARVSS
AAADGDAVFLSTDEVVELYEMMLAELTFNSKPIITDLTIIAGDQRAHGEGIAHAICARIV
EVPVDQKLPSLYLLDSIVKNIGRDYVRYFSSRLPEVFCEAYRQVHPNLYPAMRHLFGTWS
TVFPPSVLQKIETQLQFSPQVNKQSPGLNSLQASESPRPTHGIHVNPKYIRQLENSAPDN
NIQHVRGTSSSVKIYGQKPAIGYDEFDADRAEVTSSHVGAQRLNSIGSVGRAASFALGAN
KLHPSSTSRLARPLSPSRIGSDRILLSEGDEFAVENSPRRLDVASPSHPVFDYGLGRATS
RDDEISEWRRKQYSDDNHKRFETSTSYNLSNGREHQGPRALIDAYGCDRRISNNKPLQVE
RLNVNGMGNKAAPRSWQNTEEEEFDWEDMSPTLADNGRKNNFLPSSVPPFKNTSARLDLR
KLGAGTLEPDIRSNHSSQAQLPLMDDSSTIAEEAVSALGSGRGLTIKISGFQPEPNQNLG
PRYPHEAWNMPHHFSRSSHPLNSRRGRGRDFQLPFSAGSVSSLGADKMAPFVDKLPDVES
QFVRPPAVASRIGSSALDSVSAGAWSASISSSAGVWPPANVHKSHPPPVHPVYSLQKQTR
SQYDSTNSASNVMNQGPNKLLYMPEQQFNSSEGKELSLLKPPQLHDQHANLNQQNQAQQQ
FLPSQEAHNNFLPSVTASVPPHLLAPPVNHGYNAIMSMVPSNPVPAVQLPLPIQNFQNSS
LHLQGGALPPLPPGPHPSSQMIPMPQSAGLVTPGQPPSTAFSGLINSLMAQGLISLTKQA
SVQDSVGLEFNADLLKIRHESAISALYGNLPRQCTTCGLRFKCQEEHSSHMDWHVTKNRM
SKNRKQKPSRKWFVSASMWLSGAEALGSDAVPGFLPTETIVDKKDDEELAVPADEDQNVC
ALCGEPFDDFYSDETEEWMYKGAVYMNAPDGPTAGMDRSQLGPIVHAKCRSESTVVPPES
CIHDEGGNTEEGSQRKRMRS
NT seq
3123 nt
NT seq
+upstream
nt +downstream
nt
atggaatcagagaaaattttacaaaaccctagagcttcaccttcacttgctttcagtgcc
aacattaacagtaaggcgatgccaaatgagctggcgcagaagccgccgccgccgccgaca
atgatggaaaagtttcgagcgcttttgaagcaacgagaggaggaagctagggtttcttcg
gcggctgcggatggtgacgccgtgtttctcagtacggacgaggttgtggagctttacgag
atgatgctggccgaactcacttttaattcgaagccgattattactgatcttacgataatt
gctggcgaccagagagcccatggggaaggcattgctcacgcaatttgcgccaggattgtc
gaggtcccagttgaccagaaactgccatctttatatcttctggatagtattgtgaagaac
attggcagagattatgttaggtatttctcttctcgtttacctgaggtattctgtgaagca
tacaggcaagttcatcctaacctttatcctgctatgcgacacctgtttggaacttggtca
acagtgtttccaccttcagtcctccagaagattgaaactcagctgcagttttctccgcaa
gttaacaaacaatcaccgggcttgaactctttgcaggcttctgagtcacctcgaccaaca
catggcatacatgttaatcctaaatacatacgtcaattggagaattcagctccagataat
aatattcagcatgtgagaggaacatcttcaagtgtaaaaatatatggtcagaaacctgcc
attggatatgatgaatttgatgctgatcgtgcagaggttacatcatcgcatgttggagcc
caaagattgaattcaataggtagtgttggtcgtgctgcatcttttgcccttggagcgaat
aagctgcatccttcttcaacttctagactggcgagacccttgtcaccctcaagaattgga
tctgatagaattttattatctgagggtgatgaatttgcagtagaaaattctcctagacgg
cttgatgtggcttctccatcgcatcctgtgtttgattatggattaggcagagcaaccagc
agagatgatgagataagtgaatggcggagaaaacaatattctgatgataatcacaaaaga
tttgaaacttctacttcttacaaccttagcaatggacgtgagcatcaggggcctagagct
ttgatagacgcatatggatgtgacagaagaatttcaaataataaacctctgcaggttgaa
cgcctgaatgtaaatggaatgggcaataaggcagcaccaagatcatggcagaatactgaa
gaggaagagtttgattgggaagatatgagccctacattagcagataatggcaggaaaaat
aatttcttgccatcatctgttccaccttttaaaaacactagtgcaaggcttgacttaaga
aaattgggtgctggcacattggaacctgatattaggagcaatcactccagtcaggcgcag
ctaccgttgatggatgattcttctacaattgctgaagaggcagtctctgcgcttggttct
ggccgtggattgacaattaagatatctggctttcaacctgagccaaatcagaatttgggt
ccacgttatccacatgaagcgtggaatatgccacatcacttctctcggtcatcacaccct
ctgaattccaggagagggaggggaagggatttccagttgcccttttcagcaggttctgta
tcttcattgggtgctgacaaaatggctccatttgttgacaagcttcctgatgttgaatca
cagttcgtcaggccccctgcagttgcttctaggataggttcttctgctctggactcagtt
agtgctggggcatggtcagcctccatatcgtcatcagctggggtatggcctccagcaaat
gtgcataagtctcatccaccacctgttcaccctgtgtattcactgcagaaacagacccgg
agtcagtatgattcaacaaattctgccagtaatgtcatgaatcaaggtccaaataagttg
ttgtatatgcctgagcagcaatttaatagttctgagggcaaggagctaagtttgctgaag
ccaccacaattgcatgatcaacatgctaatttgaaccagcaaaaccaggcccaacaacaa
ttccttccttctcaggaggctcacaataactttcttccctctgtcacagcttcagtccca
cctcacctactggcaccaccagtgaatcatgggtacaatgctatcatgagtatggttcca
tcaaatccagttcctgcggtgcaattacctttaccaatccaaaattttcagaacagctcc
ttacatttgcaggggggagctttgccacctcttcctccaggcccgcatccatcttctcaa
atgatacccatgcctcaaagtgctggccttgttacccctgggcaaccaccaagcactgca
ttttctggtttgattaattctctcatggctcaaggattgatctcattgacaaaacaagcc
tctgtacaggattctgttggactggagtttaatgctgatcttcttaagatccgccatgag
tctgcaataagcgccctatatggaaatcttccaagacagtgcaccacttgtggcctacgg
ttcaagtgccaagaagaacatagtagtcatatggattggcatgtgactaagaacaggatg
tccaagaatcgaaagcagaaaccttctcgcaagtggtttgtaagtgctagtatgtggctc
agtggtgctgaggcattgggttctgatgcagttcctggatttttacccactgagaccatc
gtggacaagaaggatgatgaggaattggctgtccctgctgatgaagaccagaatgtgtgt
gcattatgtggagagccatttgatgatttttatagtgatgagacagaggaatggatgtat
aagggggctgtctacatgaatgcacctgatgggcctacagctggcatggataggtctcag
ttaggtcctatagtgcatgctaaatgcagatcggagtctactgtggttccccctgaaagt
tgtatacatgatgaagggggaaatactgaagagggtagtcagagaaaaagaatgcggagt
tag
DBGET
integrated database retrieval system
