Paenibacillus woosongensis: QNH46_19125
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Entry
QNH46_19125 CDS
T09437
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pwn
Paenibacillus woosongensis
Pathway
pwn03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pwn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
QNH46_19125 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pwn03400
]
QNH46_19125 (ligD)
Enzymes [BR:
pwn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
QNH46_19125 (ligD)
DNA repair and recombination proteins [BR:
pwn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
QNH46_19125 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
WHX48194
UniProt:
A0AA95I0D7
LinkDB
All DBs
Position
4187986..4188870
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AA seq
294 aa
AA seq
DB search
MSKTTKGTILVEGEEVTISNPDKLLWPEAGITKKLYLEKLAEISPYLLRYCRNRLLTTIR
YPDGVGRKFFYQKNAPEPLPSFVRTSMHEGVDYVVLDSLPVLLWLGNLACIEFHPSLHYV
HEQLPCEWMIDLDPSREEEPRIMEAAAYVGDILASLGLQSVPKTSGATGVQIIVPVEYGV
TFDELRLIGQFVARYATEKYPELFTIERLKKDRGDKIYFDYLQHYGGKTLAAPYTPRARP
TANVSTPLTWDEVRSNPLPSDFNLHNIGERLKQKGDLLAEVPPQSVQLILQHLR
NT seq
885 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaaacgacgaaaggtacgattctcgtagagggtgaggaagtcaccatatccaat
cccgataagctgctgtggcccgaggcgggaattacgaagaagctctatttggagaagctt
gctgaaatctctccctatctgctccgttactgccggaaccgcctgcttacgacgatccgg
tatccggacggggtggggcgcaagtttttttaccagaaaaatgcccctgaaccgctgccg
tcgttcgtccgcacctcgatgcatgagggagtcgactacgtcgtactggacagcctgccg
gtactgttgtggctcggcaacttggcgtgcattgagttccatccgtcgctgcattatgtt
cacgagcagctgccgtgcgaatggatgatcgatttggatccatcgcgggaggaggagccg
cgcattatggaggccgcggcctatgtcggagacattctggcctctttggggcttcagtcg
gtgccgaagacctccggggctaccggcgtgcaaatcatcgtgccggtcgaatacggcgta
acgtttgacgagctgcggctgatcggacagttcgtagcccgctatgctacggagaaatac
ccggaactattcaccatcgaacggctcaagaaggatcggggagacaaaatctatttcgac
tatttgcagcattatggcggaaagacgctagctgcgccgtatactccccgggcacgtcct
acggccaacgtatcgacgcctttaacctgggacgaggtgcgcagcaatccgctgccctcc
gatttcaatctgcacaatatcggggagcgtttgaagcaaaaaggcgatttgcttgcagag
gttccgccgcaatccgtccagctgatccttcagcatctgcggtaa
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