Pectobacterium wasabiae: A7983_21660
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Entry
A7983_21660 CDS
T04535
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pws
Pectobacterium wasabiae
Pathway
pws03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pws00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
A7983_21660
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pws03400
]
A7983_21660
Enzymes [BR:
pws01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
A7983_21660
DNA repair and recombination proteins [BR:
pws03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
A7983_21660
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MFD_D3
UvrB_inter
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AOR65822
UniProt:
A0A1D7Z7L1
LinkDB
All DBs
Position
4772146..4775595
Genome browser
AA seq
1149 aa
AA seq
DB search
MPENYRYSLPPKAGEQRLLGELTGAACAVECAEIVERHAGLVVLIAPDMQNALRLRDEIQ
QFTDQHVTTLPDWETLPYDSFSPHQEIISTRLSTLYQLPNMTRGVLILPVNTLMQRVCPH
SFLHGHALVLKKGQRLARDKLRSQLEQAGYRSVDQVMEHGEYATRGALLDLFPMGSEEPY
RIDFFDDEIDSLRLFDVDTQRTLNEVPHINLLPAHEFPTDKTAIELFRSQWREQFEVRRD
AEHIYQQVSKGVWPAGIEYWQPLFFSEPLPSLFSYFPNNTLIVNTGNIEQSAERFWQDIQ
QRFESRRVDPMRPLLPSDSLWLRVDGLFTELKAWPRVQLRTDSLPEKAANVNLAYLPLPD
LAVQHQQKSPLDALRRFIEQFDGQIVFSVESEGRRETLQELLARIKLNPKLINTLEQAQG
RGTYLIIGASEHGFIDTLRQRALICESDLLGERVSRRRQDSRRTINTDTLIRNLAELRPG
QPVVHLEHGVGRYVGLTTLEAGGIKAEYLILTYAGEDKLYVPVSSLHLISRYAGGADENA
PLHKLGGEAWSRARQKAAERVRDVAAELLDIYAQRAAKSGFAFKHDKTQYQLFCESFPFE
TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTL
LAQQHFDNFRDRFANWPVKIEMISRFRSAREQTQVLEETQEGKVDILIGTHKLLQSDVRW
RDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPP
ARRLAVKTFVREYDNLMVREAILRETLRGGQVYYLYNDVENIEKATQRLAELVPEARIAI
GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPSANTIIIERADHFGLAQLHQLR
GRVGRSHHQAYAYLLTPNPKAMSTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG
DDQSGQMTSVGFSLYMELLESAVDALKAGREPSLEDLINSQTDVELRLPALLPDDFIPDV
NTRLSLYKRIASAKNTVELDELKVELIDRFGLLPDASRHLLQIAALRQQAQALGIRRIEG
NEKGGFIEFGEQNRVDPSHLIGLLQRDPGTYRLDGPTRLKFMKDLSDRPQRIEFIGSLLQ
NMAQHTLAA
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaaaattaccgttattcgttgccacccaaagcgggcgagcaacgcctgttgggc
gagttaaccggcgctgcctgcgccgttgaatgtgcagaaatcgttgaacgccacgccggt
ctggtggtgcttatcgctcccgatatgcaaaacgccctgcgattgcgtgatgaaattcag
caatttaccgaccagcacgtcaccacgctgcctgactgggaaacgctgccctacgatagc
ttttctccgcatcaggaaattatttcaactcgcctttccacgctctatcaattgcccaac
atgacgcgcggcgttctgattctgccggtcaacacgctgatgcaacgcgtttgtccacac
agtttcctgcacggtcatgcgctggtgttgaaaaaaggccagcgcctcgcgcgcgataag
ctgcgttcgcagttggagcaggcgggctaccgtagtgtcgatcaggtgatggagcacggc
gaatatgccacgcgcggtgcgctgctggacctgttcccaatggggagtgaagagccctat
cgtatcgatttcttcgacgatgagatcgacagtctgcgcctgttcgatgtggatacacag
cgaacgctaaatgaagtgccgcacattaatctgctgcctgcgcatgagttcccaaccgac
aaaacggcaatcgagcttttccgcagccagtggcgcgaacagttcgaggtacgacgcgat
gccgagcacatttatcaacaggtcagcaaaggcgtctggcccgctgggatcgaatactgg
cagccgctattcttcagtgagccgctgccgtcgctattcagctacttcccgaacaacacg
ctgatcgtcaacacgggcaatattgaacagagcgctgagcgcttctggcaggatattcag
cagcgctttgaaagccgccgtgtcgatcccatgcgcccgctgctgccgtcggattccctc
tggctgcgcgtcgacgggttgttcaccgagctgaaagcgtggccacgcgtacagttaaga
accgattcgctgccggaaaaagccgccaacgtgaatctggcctatctgccgctgccggat
ctggcggttcaacaccagcagaaatcgccgctggatgcactgcgccgttttatcgaacag
ttcgacggccagatcgttttttctgttgagagcgaaggtcgacgtgaaacgctacaagag
ctgctggcacgcatcaagctgaaccctaagctcatcaatacgctagagcaggcacaggga
cgtggtacttatctgatcattggtgccagcgaacacggcttcatcgacacgctacgccag
cgtgccctgatctgcgaaagcgatctgttgggtgaacgcgtcagccgccgccgtcaggat
agtcgccgcacgattaataccgatacgctgatccgcaacctggcagaactccggcctggg
cagccggtcgttcacctcgaacacggcgttggccgctatgtcgggctgaccacgctggaa
gcgggcggcatcaaggccgaatacctgattttgacctatgcgggtgaagacaagctgtac
gtccccgtttcctcactgcatttgatcagccgctatgctggcggtgccgatgaaaatgcg
ccgctgcacaaactggggggtgaagcgtggtcgcgtgcgcggcaaaaagcggcggaaaga
gtgcgcgatgtcgccgccgagctgctggatatttatgcgcagcgcgcagcaaagagcggc
tttgcctttaagcacgacaaaacgcagtaccagcttttctgcgaaagtttccctttcgaa
accacgcccgatcaggcgcaggccatcaacgccgtactgagcgatatgtgccagccgttg
gcgatggatcgtctggtgtgtggcgatgtcggctttggtaaaaccgaagtagcgatgcgt
gctgcatttttggcggttgaaaaccataagcaggttgcggttctggtgccgacgacgctg
ttggcgcagcagcattttgacaatttccgcgatcgttttgccaactggccggtgaagatt
gaaatgatctcccgcttccgcagtgcgcgcgagcaaacacaggtgctggaagaaacgcag
gaaggtaaagtcgatattctgatcggcacccataaactgttgcagagtgatgtacgctgg
cgcgatttagggctgctgattgtcgacgaagaacaccgcttcggcgtgcgtcacaaagag
cgcatcaaagcgatgcgcgcggatgttgatatcctgacgctgaccgctacgccgattcca
cgaacgctcaacatggcaatgagcggcatgcgcgatctgtcgattattgccacgcctccc
gcccgtcgtctggcggtgaaaacgttcgtgcgcgaatatgacaatctgatggtacgtgaa
gccattcttcgtgagacgctgcgcggtgggcaggtgtactacctctataacgacgtcgaa
aatatcgagaaagccactcaacggttggcggaactggtgccggaagcacgcattgctatc
ggccacggccagatgcgtgaacgtgaattggaacgggtgatgaacgacttccatcaccag
cgttttaacgtgctggtatgtaccaccatcatcgaaaccgggatcgacataccaagcgcc
aacaccatcatcattgagcgcgccgatcacttcggtctggcacagttgcaccaactacgc
ggtcgcgtggggcgttctcaccatcaggcttatgcctatctgttgacaccgaaccctaaa
gcgatgagcaccgatgcacagaaacgtctggaagcgatcgcctcattagaagacctcggt
gccggttttgcgctggcaacgcacgatctggaaattcgcggcgcgggcgaactgctcggg
gacgatcagagtgggcagatgaccagcgtcggtttctcactgtatatggaactgttggaa
agcgccgtagacgctctgaaagccggtcgggagccgtcgctggaagatctgatcaatagc
cagaccgacgtcgagctacggttgcctgcccttctgcccgacgatttcatccccgacgtc
aatacgcgcctgtcgctatacaaacgtattgccagtgcgaaaaacacggtcgaactggat
gagctgaaagtagagctgatcgatcgcttcggtctccttcccgatgcaagccgacatctg
ttgcagattgccgccctgcgccagcaggcgcaggcgctgggtattcgccgtattgaagga
aacgagaaaggtggatttatcgaatttggcgagcaaaatcgcgtcgatccgtctcatctc
atcggcctgttgcagcgcgacccaggcacctaccgtcttgatggcccaacccggctgaaa
ttcatgaaggatttgagcgatcgtccgcagcgcatcgagtttatcggttcgctgctacag
aacatggcacagcatacgctggcggcgtaa
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