Polynucleobacter wuianus: A8O14_05395
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Entry
A8O14_05395 CDS
T09802
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pwu
Polynucleobacter wuianus
Pathway
pwu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pwu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
A8O14_05395
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pwu03400
]
A8O14_05395
Enzymes [BR:
pwu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
A8O14_05395
DNA repair and recombination proteins [BR:
pwu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
A8O14_05395
BRITE hierarchy
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
AroM
ERCC3_RAD25_C
DUF4217
Motif
Other DBs
NCBI-ProteinID:
ANI99569
UniProt:
A0A191UEW7
LinkDB
All DBs
Position
1024829..1028371
Genome browser
AA seq
1180 aa
AA seq
DB search
MSDALNLAPPIPAPRAGQRFTFTGLVGSADAALLAQSALRYRNDFSVMVVFCAQAQEAQR
LVEEIPAFAPQLKVRLLPDWEILPYDHFSPHQDLVSERLATLYELLNGSCDIVLVPVTTA
LQRLGPPQFLSGHTFFFRQGDKLNESALRLQLQQAGYDPVSAVIRPGEYSIRGGLIDLFP
MGSSLPYRLDLFGDEIEQIRSFDPDTQRSLYPVKEVRLLPGHEFPFNDEARTAFRGRWRE
VFEGDPTRCAIYKDANLGIPSAGIESYLPLFFEGQSNLFDYFPRSGDPVWLVNIGDAEEA
IRGFWKDTVSRYEFLKHDLDRPILPPKELFLDVDEFFSTSKPYARLVLDNETNEAKQFLP
VPDIAVHRRDADPISRLRKVVSQEKLRVLICSDSAGRKESIRQLLEESNAVAGQDGKPLY
QLQPEGFEGIADFIKSAALFGLVTAPLFNGFLWEAENLLVLTEAELFTSTARQRRKSKGS
ESADPDMLFKDLSELKIGDPVVHTEHGIGRYQGLVLLNLAPPKEAPIFEEFLHLQYAGQA
TLYVPVQQLQMVTRYAGSDPDSAPLHQLGSGQWDKAKRKAAQQIRDTAAELLGLYAARAI
RKGHAFEFSAHDYAAFAESFGFEETPDQANAIAAVIGDMTSGTPMDRLVCGDVGFGKTEV
ALRASFVAVMGGKQVAILAPTTLLAEQHVATWKDRFADWPVRIVELSRFKTTKEINAALE
AIAKGEADIIIGTHKLLSKETQFANLGLVIVDEEHRFGVRQKDALKALRAEVDILTLTAT
PIPRTLGMAMEGLREFSIIATAPQKRLAIKTFVRREGDGVIREAVLREIKRGGQVYFLHN
EVETIQNRKHALQELIPEARISVAHGQMHERELESVMREFVTQRTNILLCTTIIETGIDV
PTANTIIMHRADKFGLAQLHQLRGRVGRSHHQAYAYLLVPDPEALSKQAQLRLNAIQAME
ELGSGFYLAMHDLEIRGAGEVLGDKQSGEIHEIGFQLYTEMLNRAVKSLRSGKEPDLLSP
LQATTDVNLGVPALLPEDYCPDVHERLSLYKRFAGCNDFSELMGLREELVDRFGDLPDQA
KSFYETHRLRLEMASFGIKKIDATTAAIQIQFIPNPPIDPMKIIQLIQTSKHIQLNGQDK
LKVLPQKDREFEKLEQRLDAIRQVLRRLNESAVLTIAKAD
NT seq
3543 nt
NT seq
+upstream
nt +downstream
nt
atgtctgatgcattaaatctagcaccccccatacccgcgccacgggctgggcagcgcttt
acctttacggggctagtgggatcagctgatgcggccctcctcgctcaatccgccctgcgt
tatcgcaatgatttctccgtcatggtggttttttgtgcccaagcccaggaagcccaaaga
cttgttgaagaaatcccagcatttgctccgcaactgaaggttcgcttgttgcctgactgg
gaaatcctgccttacgatcatttttcaccgcaccaagatttagtctcagaacgattggct
acgctttatgaattgctcaatggaagctgcgatattgttttggttccagtgacaactgct
ttgcaacgattaggaccgccgcaatttttatccggccacacctttttctttaggcaaggc
gacaaacttaatgaatctgcactaagacttcagttgcaacaagcgggatatgatcccgta
agcgcagtaatacgtcccggtgaatacagtattcgcggtggactcattgatttatttcca
atgggctcaagccttccctatcgcctcgatttattcggcgatgagattgagcaaattcgt
tctttcgatccggatacccaacgcagtttgtatccagtcaaagaagttcgcttgctacct
ggacatgagttcccttttaatgatgaagctcgcactgcctttagaggtcgttggcgcgaa
gtattcgagggcgacccaacaagatgcgcaatctacaaggatgccaacctaggtattccg
agtgctggtattgagtcctacctgccattgttctttgaagggcaatccaatttatttgat
tactttcctagatcaggcgatccagtctggttagtcaatattggcgatgcagaagaagcg
attcgtggtttctggaaagatactgtatcgcgttatgagtttcttaagcacgatttagat
cggcccattcttccgccaaaagaattattcctcgatgtcgatgaattcttcagcacatct
aaaccttatgcgcgtcttgttttggataacgagaccaatgaagcaaagcaatttctgcca
gtaccggatattgccgttcatcgtcgagatgccgatccaatttcccgtctgcgtaaggta
gtttctcaagagaaattacgcgttctcatttgtagtgatagtgcaggtcgtaaagaatcg
atccgccaacttcttgaggaaagcaatgctgttgcaggccaagatgggaagcccttgtat
caactccaacctgagggcttcgaaggcattgctgattttattaagagtgctgccttattt
gggctggtgaccgccccactgtttaatggcttcttatgggaagctgaaaacttactggtt
ctaacagaggcggaactattcacctcaacagctagacaaaggcgcaaaagtaaggggtct
gagagtgccgatccagacatgctctttaaggacttgtctgaactcaagattggtgaccct
gtagttcatacggagcatggcatcggtcgttatcaaggtttagtgctcctcaatctagca
ccccctaaagaagcgcctatttttgaagagttcctgcatttgcaatatgcaggacaagcc
actctttatgtacctgtgcaacagttacaaatggttacccgttatgcaggttccgatcca
gattctgcgccattacatcagcttggatctggtcaatgggataaggctaagcgtaaagct
gcgcaacaaatacgagacacggctgcagagctgttaggcctttacgcggctagagccatt
cgtaagggccatgcatttgaattctcggctcatgactacgcggcatttgcagagagcttt
ggctttgaagaaacgcccgatcaagccaatgcgattgcagcagttatcggtgatatgacc
agcgggacacctatggatcgattggtctgtggtgatgttggttttggtaagactgaagtt
gccctacgcgccagctttgtggctgtcatgggcggaaagcaagtagccattcttgcacca
accactctgcttgctgaacagcatgttgcaacctggaaggatcgctttgcagattggcca
gtgcgcattgtcgagctatcacgctttaaaactaccaaagaaattaatgctgctcttgag
gctattgctaaaggtgaggccgacatcatcatcggcacacataagctgttatcaaaagaa
actcaatttgccaatttaggattggtcatcgtagatgaagagcatcgctttggggtgcgc
caaaaggatgccctaaaagccttgcgtgcggaggtggatatcttgaccttaacagccacc
cctatcccgagaactctgggaatggcaatggaaggccttcgcgaattttctatcattgcc
acagcaccacaaaaacgcctagcaattaaaacttttgttagacgagaaggcgatggcgtg
atacgtgaagccgtccttcgtgaaattaagcgtggtggtcaggtctactttttacataat
gaagttgaaacgattcaaaatcgcaaacatgcccttcaagaactgattcctgaagctcgt
ataagcgtggcacatggtcaaatgcatgagcgcgaactcgagtctgtcatgcgggagttc
gtcacacaacgcaccaatattctcttatgtacaaccattattgaaaccggtattgatgtg
cctaccgcaaacaccatcatcatgcatcgtgctgataagtttggtttggcacagttgcat
caattacgtggtcgtgttggtcgctctcatcatcaagcatatgcttacctcctagtgccc
gatcctgaagcattaagcaaacaagcccaattgcgtttgaatgcaattcaggctatggaa
gagttgggttctggattctatttagcaatgcatgaccttgagattcgtggtgctggcgaa
gtcttgggcgataagcagtctggcgagattcatgaaattggctttcagttgtataccgaa
atgctgaatcgcgcagttaaatcattacgcagcggcaaagaaccagacctgctatctcca
ttacaggcaacaaccgatgtcaatttaggggttcccgccctgttacctgaagattattgc
cctgatgttcatgagcgattatctctatacaagcgctttgctggatgcaatgatttttcc
gaactcatgggtctgcgtgaagaattggtcgatcgtttcggtgatttgccagaccaagcg
aaatccttttatgagacccatcgcttacgtttagaaatggctagctttggtattaagaaa
attgatgctactacagcagccattcagattcaatttataccgaatccaccgattgatccg
atgaagatcattcaattaattcaaacatcaaaacacattcaattaaatggtcaggataaa
ttaaaggttctgccacaaaaagaccgggagtttgagaagctagagcaacgtcttgatgcc
attagacaggttttacgtcgtttaaatgagtctgcagttctaactatcgctaaagccgac
tga
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