Pseudomonas wenzhouensis: J7655_02340
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Entry
J7655_02340 CDS
T07852
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pwz
Pseudomonas wenzhouensis
Pathway
pwz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pwz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J7655_02340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pwz03019
]
J7655_02340
Enzymes [BR:
pwz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
J7655_02340
Messenger RNA biogenesis [BR:
pwz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
J7655_02340
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
UFQ98083
LinkDB
All DBs
Position
complement(496167..498050)
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AA seq
627 aa
AA seq
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MSFASLGLSEALVRAVEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL
ERLFPDGHPDREQRHGPKQPRVLVLTPTRELAAQVHDSFKLYARDLKFVSACIFGGVGMN
PQVQALAKGVDVLVACPGRLLDLANQKAIDLSHVEILVLDEADRMLDMGFIHDVKKVLAK
LPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAASHKRALL
AHLITQGAWEQVLVFTRTKHGANRLAEYLEKHGLPAAAIHGNKSQNARTKALADFKANKV
RILVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKL
LKSIERMTKQKIPDGDLLGFDASAVEAERPEVREPRQPRNAGPKKAKAEGADKPKGERNS
GGRRDKGKDSGKEQKAKPQQQGQGQNRRGQQPRNQSRGAAPAIPPLPPDRDPEEFLDDEI
DNFGNRADYVPVQNKPQGRGRRPGAAAAGTGAAQGQGQKAKSSNRPPRSNAAGTPATPGK
NRRQGGQGRTGGGRGRPAHDGRITSLDRDELPRTEAAVRNPREKQPIIMHKGSRLDRFPS
AEQLDELSNSTRPRGEKPALLTRNREE
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcctccctcggtctctccgaggctttagtccgtgcggtcgaagccgccggc
tacacccaacccactccggtgcaacagcgggccattcccgccgtgttgcaaggtcgcgat
ctcatggtggcggcccagacgggtactggtaagacgggcggtttcgccctgcccattctc
gagcgcctgttcccggacggtcacccggatcgcgaacagcgccacggcccgaaacaaccg
cgcgtactggtgctgacaccgacccgcgaactggccgcccaggtgcatgacagcttcaag
ctgtatgcccgtgacctgaaattcgtcagcgcctgcatcttcggcggcgttggcatgaac
ccgcaggttcaggcgctggccaaaggcgtcgatgtgctcgtcgcctgccccggccgcctg
ctcgatctggccaaccagaaagccatcgacctgtcgcatgtggaaattctcgtgctcgat
gaagccgaccgcatgctcgacatgggcttcatccacgacgtcaagaaggtgctggccaag
ctgccagccaaacgccagaacctgctgttctcggccaccttctccaaggacatcaccgac
ctcgccggcaagttgctgcacaaccccgagcgcatcgaggtgacgccgccgaacaccacg
gtcgagcgtatcgaacaacgcgtcttccgcctggccgccagccacaagcgcgccctgctc
gctcacctgatcacccagggcgcctgggaacaggtgctggtattcacccgcaccaagcac
ggcgccaaccgcctggccgaatacctcgagaaacacggcctgccggctgccgcgattcat
ggcaacaagagccagaacgcgcgcaccaaggccctggcagacttcaaggcgaacaaggtg
cgcatcctggtggccaccgatatcgccgcccgtggcctggatatcgatcagctgccgcat
gtggtcaacttcgagttgcccaacgtcgaggaagattacgtccaccgcatcggccgtacc
ggtcgcgcagggcgtagcggtgaggccatctcgctggtcgccccggatgaagagaagctg
ctgaaaagcatcgagcgcatgaccaagcagaagatccccgacggtgatctgctgggcttc
gatgccagcgccgtggaagcggaacgtccggaagtgcgtgaacctcgccagccgcgcaat
gccgggccgaaaaaggccaaagccgaaggcgccgacaagcccaagggcgagcgcaacagc
ggtggtcgtcgagacaagggcaaggacagcggcaaggagcagaaagccaagccgcagcag
cagggtcagggccagaatcgccgtggtcagcaaccgcgcaaccagagccgtggcgccgcc
ccggccattccgcccttgcctccggatcgtgatccggaagagttcctcgacgacgagatc
gacaatttcggcaaccgtgccgactatgtgccggtacagaacaagccgcaaggccgtggc
cgccgcccaggcgctgccgctgcgggcactggcgccgctcagggtcagggccagaaagcc
aagagcagcaacaggccgccgcgcagcaatgctgccggcaccccggccacgccaggcaag
aatcgtcgccagggtggccagggccgcactggcggtggccgtggccgaccggcacatgac
ggtcgcatcacctcgctggaccgcgacgagctgccgcgtaccgaagcagccgtgcgcaac
ccgcgcgaaaagcagccgatcatcatgcacaagggctcgcgcctggaccgcttccccagc
gccgagcaacttgacgagctgagcaacagcacccgcccgcgtggcgagaagccggcactg
ctgacgcgtaaccgcgaagagtaa
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