Pseudomonas xanthosomatis: KSS93_11930
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Entry
KSS93_11930 CDS
T07606
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pxa
Pseudomonas xanthosomatis
Pathway
pxa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pxa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KSS93_11930 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pxa03400
]
KSS93_11930 (mfd)
Enzymes [BR:
pxa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KSS93_11930 (mfd)
DNA repair and recombination proteins [BR:
pxa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
KSS93_11930 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
AroM
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
QXH48567
LinkDB
All DBs
Position
complement(2683842..2687291)
Genome browser
AA seq
1149 aa
AA seq
DB search
MSVLRLPQMSATAGKQTWGNLPGAALSLAIAEAASSAGRFTLLLTADSQAADRLEQELRF
FAPELPVLPFPDWETLPYDLFSPHQDIISQRIASLYRLPELDHGILVVPVTTALHRLAPT
RFLLGSSLVLDVGQKVDVEQMRTRLEASGYRCVDTVYEHGEFAVRGALIDLFPMGSKAPY
RIDLFDDEIETLRTFDPETQRSIDKVDSIRLLPAREFPMQKDEVTRFKARFRERFDVDFR
RSAIFQDLTSGIIPAGIEYYLPLFFEETATLFDYLPANTQVFSLPGVEQAAEHFWNDVRG
RYEDRRGDLSRPLLPPAELFMPVEDCFARLKQWPRVVVSAEDIDAGAGRERFPARALPNL
AIEAKANQPLAELSNFLDQFSGRVLFTAESAGRREVLLELLERLKLRPRTVENWADFVTG
NERLAITIAPLDDGLLLDDPALALVAESPLFGQRVMQRRRREKRGEAANDAVIKNLTELR
EGAPVVHIDHGVGRYLGLATLEIDGQAAEFLTLEYAENAKLYVPVANLHLIARYTGSDDA
LAPLHRLGSEAWQKAKRKAAEQVRDVAAELLDIYARRAARKGYAFADPAADYATFSAGFP
FEETPDQQAAIEAVRADMLAGQPMDRLVCGDVGFGKTEVAMRAAFIAVHSGRQVAVLVPT
TLLAQQHYNSFRDRFAEWPVKVEVMSRFKSAKEVAAAAAELAEGKIDILIGTHKLLQDDV
RFKDLGLAIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIAT
PPARRLSVRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEARI
GIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIVIERADKFGLAQLHQ
LRGRVGRSHHQAYAYLLTPPRQQISSDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGEL
LGEGQSGQIQAVGFTLYMEMLERAVKAIRKGTQPNLEQPLGGGPEINLRLPALIPEDYLP
DVHARLILYKRIASAADEEGLKDLQVEMIDRFGLLPEPTKNLMRLTLLKLQAEKLGIKKV
DAGPNGGKLEFEAETPVDPLTLIKLIQGQPKRYKFEGATQFRFLVPMERPEERFNTLEAL
FERLAPQTT
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
gtgtcagttctgcgcctaccgcaaatgtcggccacggccggcaaacaaacctggggcaac
ctgccaggtgccgccctgagccttgccatcgccgaagccgccagcagcgccggccgcttt
accctgctgttgaccgccgacagccaggcggccgaccgcctggagcaggagctgcgcttc
tttgcgcccgagcttccggtgctgcccttccccgactgggaaaccctgccctacgacctg
ttttcgccgcaccaggacatcatctcgcagcgcatcgccagcctgtaccggctgccggag
ctggaccacggcatccttgtagtgccggtgaccaccgccctgcaccgcctggcccccacg
cgctttttgctgggcagcagcctggtgctggacgtgggccagaaggtcgatgtggagcag
atgcgcacccggctcgaggccagcggctaccgctgcgtcgatacggtgtacgagcatggc
gaattcgccgtgcgcggcgcgctgatcgacctgttcccgatgggcagcaaggcgccttat
cgcatcgatttgttcgatgacgagatcgaaaccctgcgcaccttcgaccccgagacccag
cgctcgatcgacaaggtcgactcgatccgcctgctgccggcccgcgagttccccatgcag
aaggacgaggtgacgcgcttcaaggcgcgtttccgcgagcgcttcgatgtggattttcgc
cgcagcgcgatcttccaggacctgaccagcggcatcatccccgccggcatcgagtactac
ctgccgctgttcttcgaagaaaccgccaccctgttcgactacctgccggccaacactcag
gtgttctcgctgccgggcgtggagcaggccgccgagcacttctggaacgacgtgcgcggc
cgctatgaagaccgccgcggcgacctcagccggccgctgctgccgcccgccgaactgttc
atgccggtggaagactgcttcgcccgcctcaaacaatggccgcgggtggtggtcagcgcc
gaggatatcgatgccggcgccgggcgcgagcgcttcccggcccgcgccctgcctaacctt
gccatcgaggccaaggccaaccagccgctggcggagctgtccaacttcctcgaccagttc
agcggccgggtgctgttcaccgccgagtccgccggccggcgcgaagtgctgctggagctg
ctcgaacgcctgaaactacgccccaggactgtcgaaaactgggccgacttcgtcaccggc
aacgagcgcctggccatcaccatcgccccgctggacgacggcctgctgctggacgacccg
gcactggcgctggtagccgagagcccgctgttcggccagcgggtgatgcagcgccggcgc
cgcgaaaaacgcggcgaggccgccaacgacgcagtcatcaagaacctcaccgagctgcgc
gaaggcgcgccggtggtgcacatcgaccatggcgtgggccgctacctgggcctggccacc
ctggaaatcgacggccaggccgccgagttcctcaccctcgaatacgccgaaaacgccaag
ctgtacgtgccggtggccaacctgcacctgatcgcccgctacaccggcagcgacgacgcc
ctggcgccgctgcaccggctgggctccgaagcctggcagaaagccaagcgcaaggccgcc
gagcaggtgcgcgacgtggccgccgagctgctcgacatctatgcccgccgcgccgcgcgc
aagggctatgcctttgccgacccggccgctgactacgccaccttcagcgccggcttcccg
ttcgaagaaacccccgaccagcaggccgccatcgaagcggtgcgcgccgacatgctcgcc
ggccagccgatggaccgcttggtgtgcggcgacgttggcttcggcaagaccgaagtggcc
atgcgcgcggcgttcatcgccgtgcacagcggccgccaggtggcggtgctggtacccacc
accctgctcgcccagcagcactacaacagcttccgcgatcgctttgccgaatggccggtg
aaggtcgaggtgatgagccgcttcaagtccgccaaggaagtcgcagccgcagcggcggag
ctggccgaaggcaagatcgacatcctcatcggcacccacaagctgctgcaggacgatgtg
cgcttcaaggacctgggccttgcgatcatcgacgaagaacaccgcttcggggtacgccag
aaagaacagctcaaggccctgcgcagcgaggtggacatcctcaccctcaccgcaacgccg
atcccgcgcaccctgaacatggcggtgtcgggcatgcgcgatttgtcgatcatcgccacg
ccgccggcgcggcgcctgtcggtgcgcaccttcgtcatggagcagaacaagagcacggtc
aaggaagccctgctgcgtgagctgctgcgcggcggccaggtgtactacctgcacaacgat
gtgaaaaccatcgaaaaatgcgccgccgacctggccgagctggtgcccgaggcgcgcatc
ggcatcggccacgggcagatgcgcgagcgcgagctcgaacaggtgatgagcgacttctat
cacaagcgcttcaacgtgctgatcgcctcgaccatcatcgaaaccggcatcgacgtgccc
agcgccaacaccatcgtcatcgagcgcgccgacaagttcggcctggcccagctgcaccag
ctgcgcggccgggtcgggcgcagccaccaccaggcctacgcctacctgctcacgccaccg
cgccagcaaatcagcagcgacgccgaaaaacgcctggaagccatcgccaatacgcaagac
ctgggcgcaggctttgtactggccaccaacgacctcgagatccgcggcgccggcgaactg
ctgggcgaaggccagagcgggcagatccaggcggtgggcttcacgctgtacatggaaatg
ctcgagcgcgcggtcaaggcgatccgcaagggcacccagcccaacctcgagcaaccgctg
ggcggcggcccggagatcaacctgcgcctgccggcgctgatccccgaggactacctgccc
gatgtgcatgcgcggctgatcctgtacaagcgcatcgcctcggccgccgatgaagaaggc
ttgaaagacctgcaggtggagatgatcgaccgcttcggcctgctgcccgagccgaccaag
aacctgatgcgcctgaccctgctcaagctgcaggccgagaagctcggcatcaagaaggtc
gatgccggccccaacggcggcaagctggagttcgaggccgaaacgccggtcgacccgctg
accctgatcaagctgatccagggccaaccgaaacgctacaagttcgaaggcgcgacccag
ttccgcttcctggtgccgatggaacgccccgaagaacgcttcaataccttggaggcgctg
ttcgagcgcctcgccccacagaccacttaa
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