Pyrus x bretschneideri (Chinese white pear): 103950457
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Entry
103950457 CDS
T03446
Name
(RefSeq) DNA ligase 4 isoform X2
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
pxb
Pyrus x bretschneideri (Chinese white pear)
Pathway
pxb03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pxb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
103950457
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pxb03400
]
103950457
Enzymes [BR:
pxb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
103950457
DNA repair and recombination proteins [BR:
pxb03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
103950457
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
BRCT
DNA_ligase_A_C
PTCB-BRCT
RNA_ligase
DNA_ligase_IV
Motif
Other DBs
NCBI-GeneID:
103950457
NCBI-ProteinID:
XP_009359940
LinkDB
All DBs
Position
Unknown
AA seq
1163 aa
AA seq
DB search
MATDETKFSVLCSLFNWMQKSKTSTLKRSKFRKFLDNFCKPADYFSSIRLILPSLDRERG
SYGLKESVLATCLIDALGIARDSEDALRLINWRKGGAKTGANAGNFSLVAAEVLQRRQGL
SSGGLTIKELNDLLDRLASSENRAEKTSVLSTLINKTNAQEMKWIVMIILKDLKLGTSEK
SIFHEFHPDAEDLFNVTCDLKLVCEKLSDRNQRHKRQDIEVGKAVRPQLAMRVGDANIAW
KKFHGKEVVVECKFDGDRIQIHKNGSEVHYFSRNFLEHSEYAHAMSNIIVENVLADRCIL
DGEMLVWDTSSNRFAEFGSNQEIAKAARDGIDSDRQLCYVAFDILYVGDTSVIHQSLKER
HELLQKVVNPVKGCLEILVPNRGLNAHRNEGEPCWSLIASNVDDVEKFFKDTIENRDEGI
VLKDLGSKWEPSDRSGKWLKLKPDYIRAGSDLDVLIIGGYYGSGRRGGVVAQFLVGLAER
PVPNTYPRRFVSFCRVGTGLSDEEIEAVATKLKPYLRKYEYPKKAPPSFYQVTDNSKERP
DVWVESPEKSIILSITSDIRTIKSEVFAAPYSLRFPRIDRVRYDKPWHECLDVQSFIELV
QAGNGTTQRGTDYGGLQDTKKRSKKSPRKEEKRNLSIVPSHFVQTDVSGVKEDTLLFSNV
MFYFVNVPPTHSLDSLHKLVVENGGTFSMNLNNAVTHCVAADGKGIKYQAAKRHGDIIHI
SWVLDCCSQKKLLPLQPKYYLFLSDSSKQKLQEEIDDFSDSYYWDLDLAEIKQLLSNIHR
SEDSKVVDYYKKKYCPVERWSRFHDCCIYFKSSIHSLKPDWEVVLGLTLRRLRIEVLRGG
GRVTDSLVHATHLVVLSVQGPDGFETLLRSFTEGDKRYLHSKRLHIVGSQWLEDCLERDQ
RLQEETYSLKPNGLEESNVEEWKHDMGLEEAPCDVDAVENHNSCFPNRKGKEIEVKAAPE
NCKMLDSPERGSKRKRGRPARTSLNKGKSTVNQARRARARIGRKPAKISGNESEEGGSHD
STSLGEEVDLGERIHGTVGQESIDIQENEAMKDSESLQRGKAVEQDVAEDIRIEEPYKIA
EIKMKEKQNVQESKKREELESTADPVEAMLFDMIPSLGRKKAETTYTSTRDEKPAPDPIP
NAGPSKKKKVSYKDIASELLKDW
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
atggctaccgacgagaccaagttcagcgtgctctgcagcctcttcaactggatgcagaaa
tccaaaacctcaaccctaaagcgctccaaattccgcaaatttctcgacaatttctgcaaa
cccgccgattacttcagctccattcgcctcattcttcccagcctcgaccgcgagcgcggc
tcctacggcctcaaggagtccgtgcttgccacctgcctcatcgacgcccttggcatcgcc
agagactctgaggacgctctccgcctaattaattggcgcaagggtggcgccaagaccggc
gccaatgccgggaacttctccctcgtggcggcggaggtgttgcaacgtagacagggtttg
agttcaggtggactaacaatcaaggagttaaatgacttgcttgatcgtttagcttcgagt
gaaaacagggcagagaagacttcagttctttcgaccttgataaacaagacaaatgcacag
gaaatgaagtggattgtcatgatcattcttaaagatctgaagctgggaactagtgaaaag
agcatctttcacgaatttcatccagatgctgaagatttgtttaatgtcacatgcgacttg
aaattggtctgtgaaaagctcagtgatagaaatcagcgccataaacgccaggacattgaa
gttggaaaagctgtgcgcccacaactagctatgagagttggtgatgcaaatattgcatgg
aaaaagtttcatggtaaggaagtggttgttgagtgtaaatttgatggcgatcgcatccaa
attcataagaacggaagtgaagtacattacttctcaaggaattttcttgagcactctgaa
tacgcacatgcaatgtcaaacattatcgtagaaaatgtgctggctgataggtgtattctt
gatggtgagatgttggtctgggacacatcttctaatcgttttgctgagtttggttcaaat
caagaaatagccaaggcagcaagggatgggattgacagtgatagacagttgtgctatgtt
gcattcgatatcctctatgttggagatactagtgtgattcaccagagcttgaaggaacga
catgagcttctccagaaagttgtgaatccagtgaagggttgtttagagattttagtaccc
aatcgtggtcttaatgctcaccgtaatgaaggggaaccatgctggtcgcttattgctagt
aatgtggatgatgttgagaagtttttcaaagataccatcgaaaatagagatgaggggatt
gttttgaaggaccttggttcgaaatgggaacctagtgatcgtagtggaaaatggttaaaa
ttaaagcctgactacattcgtgcaggttctgatctggatgttcttatcataggaggatac
tatggctctggacgtcgtggaggggtggtagctcagttcttggtgggtcttgctgagcgt
ccggttccaaatacatatcctagaaggtttgtatccttttgcagagtgggcactggactt
tctgatgaagagatagaagctgttgcaacaaaattaaagccgtatttgaggaaatatgag
tacccaaaaaaggcaccaccaagtttttatcaagtaacagacaattctaaagagagacca
gatgtttgggttgaaagccctgagaaatcaataatactttctataacgagtgacatcaga
actataaagtctgaggtttttgctgcaccgtacagcctgagatttccacgtattgatcgt
gttagatatgataaaccttggcatgaatgccttgacgtgcagtcatttatagagcttgta
caagcaggcaatgggaccacacaaagggggacggattatggtggtctgcaggatactaaa
aagagaagcaagaagtcccctagaaaggaagagaaaagaaatctgtctattgtcccatct
cattttgttcagactgatgtttcgggcgtgaaggaggacacattactattttcaaatgtg
atgttttactttgttaatgtgccacccactcattctcttgattccttgcacaagctagtt
gttgagaatgggggtactttctctatgaatttaaataatgcagttacacactgtgttgca
gctgatggcaaagggatcaagtatcaggcagcaaagcgtcatggagatatcattcatatc
tcttgggtgttggattgttgttctcaaaagaaactccttccattacagccaaagtattat
ctcttcttatctgactcttctaagcagaagttacaagaagagattgatgatttttctgac
tcgtactactgggatcttgaccttgcggagataaagcagcttttaagcaacattcataga
tcagaggactccaaagttgttgactattacaagaaaaaatactgtccggtggagagatgg
tctcgctttcatgactgctgcatttactttaaatcctcaattcattccttgaagccggat
tgggaagttgtcttaggactcacactgagaaggttgaggattgaagttctcaggggtggt
ggcagagtcactgacagtcttgttcatgcgacccatttggtagtcttgtccgtgcagggt
cccgatggatttgaaactttattacgaagtttcactgaaggagacaaacgatatctgcat
agcaaaaggttgcatattgttggatctcaatggttggaagactgcttggaaagggaccaa
agattgcaagaggaaacatatagcttaaaacccaatgggttggaagaatccaacgttgaa
gaatggaaacatgacatgggtctagaagaagcaccctgcgatgtggatgcggtggaaaac
cacaattcttgttttcctaaccggaaaggaaaagagattgaagtaaaagcggctccagaa
aactgtaagatgttggactcacccgagaggggaagcaaaaggaaaaggggaagacctgct
cgcacaagcttgaacaaaggaaaatcaactgtcaaccaagctagaagagcacgggcgcgt
attggaaggaagccagctaaaatatctggcaacgagtcagaagaaggtggctctcatgac
agtacatcacttggggaagaggttgatctgggagaaagaattcacggaacggtaggtcag
gaaagtatagacatccaagaaaatgaagcaatgaaagattctgaatcgttacaaagaggc
aaagcagttgagcaagatgtcgctgaggacattagaattgaagagccgtacaaaattgct
gaaatcaaaatgaaggagaaacaaaacgtccaagagagtaaaaaacgggaggaacttgaa
tctacggctgatcctgttgaagccatgttgtttgacatgattccaagtcttggtaggaaa
aaagctgaaactacatatacgagtactcgagatgagaaaccagcaccggatccgataccg
aatgcaggaccttcaaagaaaaagaaagttagctacaaggatattgctagtgagctgcta
aaggattggtaa
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integrated database retrieval system
