KEGG   Pseudomonas xantholysinigenes: HU772_011075
Entry
HU772_011075      CDS       T07643                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
pxn  Pseudomonas xantholysinigenes
Pathway
pxn03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:pxn00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    HU772_011075 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pxn03400]
    HU772_011075 (ligD)
Enzymes [BR:pxn01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     HU772_011075 (ligD)
DNA repair and recombination proteins [BR:pxn03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     HU772_011075 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S RNA_ligase
Other DBs
NCBI-ProteinID: QXI40574
UniProt: A0A9E6Q0J8
LinkDB
Position
complement(2450817..2453285)
AA seq 822 aa
MAKPLQEYQRKRDFNATPEPAGKRARPRLAHALQYCIQKHDASHLHYDFRLELDGTLKSW
AIPKGPSLDPKVRRLAVHVEDHPLNYADFEGHIPEGHYGAGDVIVWDRGVWEPEGDPHEA
YAKGKLRFRLQGEKLSGIWNLFRTHLAGKKEQWMLVKSHDGQARSETDYRIVEALPDSVL
SERTLPPRRPAKASASTRKRKAGRKALPALLQPQLATLVDSPPSGDWRYEVKFDGYRILA
RIDGDDIRLFTRNGHDWSAKMPRQVEALKALGLDAAWLDGEMVVVGDNGAADFQALQNAF
DTEHDERITYYLFDLPWLGDEDLRELQLQARRDTLAKLLEDNASPLLRYSADFKEPVDSL
LDSACRLELEGLIGKRADSPYVGRRSSDWIKLKCKQRQEFVIVGYTDPKGSRNGFGALLL
ALHDHDSGQLRYAGKVGTGFSAATLDSILARLKPLQIVKPPLASPPTGAEARGVHWLKPQ
LLAEVAYAQMTREGIVRHSVFHGLRDDKPATAIDLERAMPAKRAAQTRSKGLGNLRLTHP
ERVVDATTGATKRQVAQYYAQVADRLLPQLKDRPVALVRAPDGLGGELFFQKNAGQLHIP
HVLSYSKAQAGQAAMVLNRADSLLGAVQMNTLELHTWNATTKDFDKPDRFVLDLDPDPAL
PWKAMLEATQLTLTLLDELGLKVFLKTSGGKGMHLVVPLTRRAGWDEVKDFSHALVEHMA
GLFPDRLSAVSGPKNRVGRIFIDYLRNGKGATTVAAYSLRAREGLPVSVPIWREELTQLK
GANQWNIGNLQARLAEVDDPWAEMARTRQSITVRMRKQLGIA
NT seq 2469 nt   +upstreamnt  +downstreamnt
atggccaagcccctgcaggagtaccagcgcaagcgcgatttcaatgccacgcccgagccg
gctggcaaacgcgccaggccacgcttggcccacgcgctgcagtactgcatccagaaacac
gatgccagccacttgcactacgatttccgcctggaactcgacggcaccctcaagagctgg
gcgatccccaagggaccctcgctcgatcccaaggtccggcgcctcgcggtgcacgtggag
gatcacccactgaattacgccgatttcgaaggacacattcccgaaggccattacggcgct
ggtgatgtgatcgtctgggatcggggtgtctgggagcctgagggcgatccgcatgaagcc
tacgccaagggcaagctgcgctttcgcctgcaaggcgagaagctatcggggatctggaat
ctgttccgtacccacctggccggcaagaaagagcagtggatgctggtcaagtcccatgac
ggacaggcgcgcagcgaaaccgactaccgcatcgtcgaggccctgccggacagcgtgctg
agcgagcgcaccctgccaccgcggcgcccggccaaggcaagcgcttccacgcgcaaacgc
aaggccggccgcaaagccctgccggcgctgctccagccacaactggccacgctggtcgac
tcacctcccagcggcgactggcgttacgaagtcaagttcgatggctaccggatcctggcc
cgcatcgacggtgacgacatacgcctgttcacccgcaatggccacgactggagcgcgaag
atgccccgccaggtcgaggcgctcaaggcactggggctcgacgcggcgtggctggacgga
gaaatggtggtagtcggcgacaatggtgcagccgatttccaggccttgcagaacgccttc
gacaccgagcacgacgaacgtatcacctattacctgttcgacctgccctggctgggcgat
gaagacttgcgcgaactgcagctacaggcacgtcgcgacaccctggccaagctgctggaa
gacaatgcttcgccactgctcaggtattcagccgacttcaaggagccagtcgactcgctg
ctcgacagcgcctgccgtctagagctcgaaggactgatcggcaaacgtgccgacagcccc
tacgtcggccgacgcagcagcgactggatcaagctcaagtgcaaacagcgccaggaattc
gtgattgtcggctacaccgaccccaagggcagtcgcaacggcttcggcgccctgctgctg
gccctgcacgaccacgacagcggccagctgcgctacgccggcaaggtcggcaccggcttc
agcgccgccaccctggacagcatcctcgcccgcctgaaaccgctgcagatcgtcaagccg
cccttggccagcccccccacaggggccgaagctcgcggcgtgcactggctcaagccgcaa
ctgctggcggaagtcgcctacgcccagatgacccgcgaaggcatcgtgcgccattcggtg
ttccacggtctgcgcgacgacaaacccgccaccgccatcgacctggagcgagcgatgccc
gccaaacgcgcagcacagacacgatccaagggcctgggcaacctgcgcctgacccacccc
gagcgtgtggtcgacgcgaccaccggggccaccaagcgccaggtcgcacagtactacgcc
caggtcgccgatcggctgctgccacagctcaaggatcggcctgtcgccctggtccgggca
ccggatggcctgggcggcgagctgttcttccagaagaacgccggccagctgcatattccc
cacgtgctcagctacagcaaggcccaggccggccaggcggccatggtgctcaatcgcgcc
gacagcctgctgggcgcggtacagatgaacacactggaattgcacacctggaatgccacc
accaaggacttcgacaagcccgaccgcttcgtgctcgacctggaccctgatcccgcgctg
ccctggaaagccatgctcgaggccacccagttgacccttaccctgctcgatgagctgggc
ctgaaggtgttcctcaagaccagcggcggtaagggcatgcacttggtcgtgccgttgacc
cggcgcgccggttgggacgaagtgaaggacttcagtcatgccttggtcgaacacatggcc
ggcctgttccccgatcgcctcagcgccgtgtccgggccgaagaaccgggtcgggcggatc
ttcatcgactacctgcgcaacggcaagggcgccaccaccgtcgccgcctactcgctgcgc
gcccgcgagggcctgccggtgtcggtgccgatctggcgcgaggaactgactcagctcaag
ggcgccaaccaatggaacatcggcaacctgcaggcgcggcttgccgaggtggacgatccg
tgggccgaaatggccaggacccgccaatcgatcaccgtgcgcatgcgcaagcaactgggg
attgcctga

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