Papilio xuthus (Asian swallowtail): 106124653
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Entry
106124653 CDS
T07456
Name
(RefSeq) DNA ligase 4-like isoform X1
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
pxu
Papilio xuthus (Asian swallowtail)
Pathway
pxu03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pxu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
106124653
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pxu03400
]
106124653
Enzymes [BR:
pxu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
106124653
DNA repair and recombination proteins [BR:
pxu03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
106124653
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
RNA_ligase
DNA_ligase_IV
DNA_ligase_A_C
BRCT_2
LIG3_BRCT
Motif
Other DBs
NCBI-GeneID:
106124653
NCBI-ProteinID:
XP_013176994
LinkDB
All DBs
Position
Unknown
AA seq
881 aa
AA seq
DB search
MSSSEIKVPADDVLFEDVCTMLDSIAKAKKKYEKVTILTNYVDDFRLKVAQINGPKDPSF
YPILRLLLPGLERERSSYNLREKRLGSKLVQALAWDEKSPASQKLLNYRANNRNQKDFTT
VVCDELKYTVSEKSTLTIGNINEILDKIANVENGKPPSLEQVLTSVLKKINVKQLKWLLR
IILKDMKLNMGQSRIFEAYDSEAEYIYDNCNDLKKVCESIEKGNTRPSQMGVEIFNSISP
MLLSPLPITKVHALSSTKTYITEEKYDGERFQIHMENHVYKYFTRRGHERHNFGTNYDSG
MLTPLLKNCFAPNVKSFILDGEMMGWNEDEEEFGSKGMNFDVKALKDHSEFKPSFCAFDL
LYYNGVPLVGLPEKGGLPLIKRLEILDELFVDIPQVLFHSKRETVRDNSDIVAAFNKSVD
EEKEGITIKDTESYYLANRRNGGWYKTKGEYTKSTIQDLDLLIIGKRSGRYYVACLDNSG
VSPRWLCMAGVGHLSAAARWALNSRLQPHWRRRAVHPTPDYLQFNKQHVEYWIPPEKSVV
IQMRASELVKSDKYGTPYTLRFQRVVKVRYDKPVQDILTFREFEEIVASDSKVVKLNKTI
SSDSIDSVANIPHKRRVKKPLQVAEQFRMQNTGEVVVKSKALLGRNICILSDDEDCSKLE
LIKILEAHGGKHTEHYGVDTWCCVAGRLTYYVKNLIELKTNDGSKIDIVSSAWLRNLPDS
DELCSLSPFDMLSVKRETRLKMSLHYDKFGDSYIQFLNVDILRKCFEKMESEKPLIYLTT
QEKFKVDKALFSDNNPYSYLRCCFLALPNSDSIYAIRAKMYGANLCDLNSENVTHIVLSK
MASNEDKMAAKKCEAFVVSEEWLDSCLREGRHVSEKSFLIH
NT seq
2646 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcaagcgaaattaaagtaccagcggacgacgtattatttgaagatgtgtgcaca
atgctagacagtatagctaaagctaagaagaaatacgagaaagttacaattttgacaaat
tatgttgatgactttaggttgaaagtggctcaaatcaatggacccaaggatccgagcttt
taccctatattaagattactgctgcccgggctagaaagagagagaagttcctataattta
agggagaagagacttggcagtaaattagtacaggctctagcttgggatgaaaagtcacca
gcttcacaaaagctattgaattatagagcaaataatagaaatcaaaaggattttactaca
gttgtatgtgacgaattaaaatatacggtgtcggagaaatcaacattaacaataggaaat
attaacgaaattcttgataagatcgcaaatgtagaaaacggaaagcctccttcactcgaa
caagtattaacatcagtgttaaagaaaataaatgtaaaacaattgaaatggttattgcgg
ataattttgaaagacatgaaactaaacatgggccagtctcgtatatttgaagcttacgat
tcagaagccgagtatatttacgataattgcaatgatttgaaaaaggtttgtgaaagtatt
gagaaagggaacactcggccatcacagatgggtgtggaaatatttaattcaattagtccg
atgcttttgagccccctgcctataaccaaagtgcatgctctctcttccacaaaaacttat
atcacagaagagaaatacgacggagaaagatttcagattcacatggaaaatcatgtttac
aagtatttcacaagaaggggccatgagagacataattttgggacaaattacgattcagga
atgttgacaccattattaaaaaattgtttcgcgccaaatgtgaaaagtttcattctagac
ggcgagatgatgggatggaatgaagatgaagaggagtttgggtcaaaaggtatgaatttt
gacgtgaaagccttgaaggatcattcggaattcaaaccaagtttctgcgctttcgattta
ctctattataatggagtacctttagttggtctaccggaaaagggcggtttacctttaatt
aaacgtctcgaaattctcgatgaactatttgtagatattccacaagttttattccatagt
aaaagagagactgtcagagacaattcagatatagttgccgcttttaataaatcagtggac
gaggaaaaagaaggtataacaatcaaagatacagagtcttattatctcgcaaaccgacgt
aacggcggctggtacaagactaaaggcgaatatacaaaaagcacaattcaagatctagat
ttgttgataattggcaaacgttcaggacgatattatgtcgcttgcctcgataattcaggc
gttagtccgcggtggttgtgcatggcgggcgtgggtcacttgagcgcggcggcgcgctgg
gcgctcaactcccgcctgcagccgcactggcgtcgccgcgccgttcacccgacgcccgat
tacctgcaattcaacaaacagcacgtcgaatattggataccacctgaaaaatctgtcgtc
atacagatgcgcgcttcggagttagtgaaaagtgataaatacggaacgccgtatacgctg
cgctttcaacgcgtcgtcaaagtccgctacgacaaacctgtgcaggacattctgacgttc
agagagttcgaagaaatagtcgcgtctgattctaaagtcgtgaaactgaataaaactatc
agctcagatagtatagacagtgtggccaacattcctcacaagaggcgggtaaagaagcct
ctgcaggtcgcggagcagttcaggatgcagaacacaggcgaagtggttgttaaatctaaa
gcacttctcggtagaaatatttgtatactctccgatgacgaagattgcagtaaactagaa
cttataaaaatattggaggcgcacggcgggaagcatacagaacattatggtgtggataca
tggtgttgtgttgctggcagattaacatattacgtcaaaaatcttatagaattaaaaact
aacgacggatcaaaaatagatatagtcagttctgcttggctgaggaatttacctgactca
gatgaactttgttctttgtcgccctttgatatgttgtccgtaaagagggagacaagactt
aaaatgagtttacattatgataaattcggtgacagttacatccagtttttaaatgttgac
atattgagaaaatgctttgagaaaatggaaagtgagaaacctcttatatatttaacaacg
caagaaaaatttaaagttgacaaagctctgttttctgataacaatccatattcatatttg
cgttgctgtttcttagctcttcccaatagcgatagtatttacgctatacgagctaaaatg
tatggcgctaatttatgtgatttaaacagtgaaaacgttacacacatcgttttatccaaa
atggcgtcaaacgaagacaaaatggcggcaaaaaagtgcgaagcttttgtagtaagcgaa
gaatggttagattcgtgccttagagaaggaagacatgtgtcggaaaaatcgtttttaata
cattaa
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