Phormidium yuhuli: NEA10_06835
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Entry
NEA10_06835 CDS
T08410
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pyh
Phormidium yuhuli
Pathway
pyh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pyh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NEA10_06835 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pyh03400
]
NEA10_06835 (mfd)
Enzymes [BR:
pyh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NEA10_06835 (mfd)
DNA repair and recombination proteins [BR:
pyh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
NEA10_06835 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
UB2H
AAA_22
Motif
Other DBs
NCBI-ProteinID:
USR92427
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All DBs
Position
complement(1595888..1599349)
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AA seq
1153 aa
AA seq
DB search
MAFSSVVRTLGRTALTQELTSSLERDGRLQLDGVPRFPKGLMVSALAHQRQQHLCLIAAT
LEEAGRWAAQLQEMDWPLVHFYPTSEASPYDDSDSDEITWGQLQVLADLVHPTAPESPRC
AIVATQRALQPHLPPPEHFAQSCLPLKLGLELSLSQLKRQLAELGYESVSLVEAEGQWSR
RGDIIDIFPVAAELPLRLEFFGDELEKMREFDPVSQRSLDKISQVVLTPCQLNRGLEDVL
GEAASDLSPSAQVGLAFAAPSSLLDYLPPDTLLVLDEPEACQGHSDRWVEHVEQDFQSHR
DRHPDLSPLHRSIQESLGACPLDRVDLRELVLSDREVQEQPGKRLNLASRRLPSTPHQFA
KIAQILREERDRGFNIFLISAQPSRTVALLQEHDCNAQFLPNPRDYPAVDRLQTHHVPIA
LKYAGQAELEGFILPTLRLVIVSDREFFGQHSLASPSYVRKRRRAASKQVDPNQLQPGDY
VVHQNHGIGQFLQLESLTLNGETREYLVLRYADGTLRVAADQLNALSRYRHTGSGHPQLN
KMSGKAWERTKNKVRKAVKKIAIDLLKLYAERAKQQGFAYPQDIPWQQELEDSFPYQPTP
DQLKATQDIKHDMESDRPMDRLVCGDVGFGKTEVAIRAIFKAITAGKQVAFLAPTTILTQ
QHYHTLKERFAPYPIQVGLLNRFRTPEERKEIQQRLMTGELDVVVGTHQLLGKSVKFKDL
GLLVVDEEQRFGVSQKEKIKALKTQVDVLTLTATPIPRTLYMSLSGIREISLITTPPPSR
RPIKTHLARYDWETIRGAIAQELDRGGQVFYVVPRVEGIEERSAKIREVVPSARIAIAHG
QMDVAELESVMLAFSSGEADVLVCTTIVESGLDIPRVNTILIEDAHRFGLSQLYQLRGRV
GRSGVQAHAWLFYSQRQQLSEAAQKRLRALQEFSQLGSGYQLAMRDMEIRGVGNLLGAEQ
SGQMNAIGFDLYRSMLEEEIREIQGQAIPKVNDTQVDLNLTAFIPRNYIPDLDHKMSAYR
QVATAESGEALQAIALDWQDCYGPLPKAASQLLRVMELKQLAKTLGFSRIKPEGKQHVIL
ETPMEEPAWGRLKSHLPKHLQSRFVYITGRVTVRGLGVLPAEKQLDSLIQWLECLRPALE
DLEDADNLAASAS
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atggctttttcttccgttgttcgcaccctgggtcgcactgccctcacccaagagctaacc
agttccttggagcgtgatggacgcttgcagctagatggcgttccccgctttcccaagggt
ctgatggtatcggccttagcccatcaacgtcaacagcatctctgtctcatcgccgccacc
ctggaagaagccggacgttgggccgcgcaactgcaagaaatggattggcccctggttcac
ttctaccccaccagcgaagcctctccctatgacgatagtgactcggacgaaatcacctgg
ggacaactccaagttttggcagatctcgttcaccccacagcccccgagtcccctcgctgt
gccattgtagccacccaacgggccctacagcctcatttaccgcccccagagcattttgct
caatcctgtctccccctcaaactcggcctagaactctctctaagccagcttaaacgccaa
ttggctgagttaggctatgaatccgtgtctctggtggaagctgaaggccaatggagccga
cgcggagatattatcgacattttccccgttgccgctgaactgcctctacgtctggagttc
tttggcgatgaactggagaaaatgcgggaatttgaccccgtgagccaacgttcccttgac
aaaatcagccaagttgtgctaacaccctgtcaactcaatcgaggcttagaagacgtcctc
ggggaagcggcctcagacctgtctcccagcgcccaagtggggttagcctttgccgctccc
tcctccctgttggactatctccccccagacaccctcctcgttctcgatgaacccgaagcc
tgtcagggtcatagcgatcgctgggtggagcatgtggaacaggacttccaaagccatcgc
gatcgccatcctgacctgagtcctctgcatcgctccatccaggagagtctgggagcctgt
cccctcgatcgcgtcgacttgagagaactggtcttgagcgatcgcgaggtccaggagcaa
ccggggaaacgtctcaacctcgccagccgccgtctccctagcacccctcaccaattcgcc
aaaatcgcgcaaattctccgggaggaacgcgatcgcggctttaacatcttcctcatctcc
gcccaacccagtcgcaccgtggccctgctacaggaacatgactgtaacgcccaatttctc
cccaatccccgggattatcccgccgtagaccgcctgcaaacccatcacgtccccatcgcc
ctgaaatacgccggccaagccgaactcgaaggctttatcctgcccaccctgcgcctcgtc
atcgtcagcgatcgcgagttcttcggtcaacatagcctagccagccccagttacgtccgc
aaacgccgtcgggccgcctccaagcaagttgatcccaaccaactgcaaccgggggactat
gtggtgcatcaaaaccatggcatcgggcagtttctacaactcgaaagtctcaccctcaac
ggggaaactcgggaatatctcgtcctacgctatgccgacggaaccctacgagtggccgcc
gatcaactcaacgccctctctcgttatcgccacaccggtagcggccatccccaactcaat
aaaatgtcgggtaaggcttgggaacggactaaaaacaaagtccgcaaggccgtcaaaaag
attgccatcgacctattgaaactctacgccgaacgggctaaacaacagggatttgcctat
ccccaggatatcccctggcaacaagaacttgaagattccttcccctatcaacctaccccc
gatcaacttaaggcgacccaggatattaaacatgacatggagagcgatcgccccatggat
cggctcgtctgtggtgatgtgggcttcggaaaaaccgaagtggcgatccgggctatcttt
aaagccatcaccgccgggaaacaggtggcgttcctggcccccaccaccatcctgactcag
cagcattatcacaccctcaaagaacggttcgccccctatcccattcaggtgggcctgtta
aaccgcttccgcacccctgaggaacgcaaggagattcaacaacgcttaatgacgggggag
ttagatgtggtggtgggaacccatcaacttctagggaaaagcgttaaattcaaagactta
gggctgttggtggtggatgaagaacagcggtttggggtgagtcagaaggagaagattaag
gcccttaaaacccaggtggatgtcttaaccctcaccgctacccccattcctcggacgctg
tatatgtccctgtcggggattcgcgaaattagtctgattaccaccccacccccctcccgt
cgtcccattaaaacccatttggcccgttatgactgggaaaccatccgtggggcgatcgcc
caggaactcgatcgcggcggccaggtgttttatgtagtgccgcgtgttgaggggattgag
gagcgatcggccaaaattcgtgaagtggttcccagtgcccgcattgccatcgcccatggt
caaatggatgtggcggaactcgaatccgtgatgttggcctttagtagcggggaagcggat
gtactggtttgtaccaccattgtcgagtcggggttagatattcctcgggtcaataccatt
ttgattgaagatgcccatcgcttcggcctatctcaactctatcaattacgaggtcgggtg
gggcgatcgggggttcaggcccatgcctggttattttatagtcaacgtcagcaactctcc
gaggcggcccagaagcgattacgggccctgcaagagtttagtcaactgggatcggggtat
cagttggccatgcgagatatggaaattcgcggtgtgggtaatctgttgggggcagaacag
tcaggtcagatgaatgccattggctttgacctctatcgcagcatgttagaggaagaaatc
cgtgaaattcagggtcaggccattcccaaagttaacgatacccaagtggatctcaaccta
acggcctttatccctcgcaactatatcccggatctcgaccataaaatgagtgcctatcgt
caggtggccaccgctgagtccggcgaggcgttgcaggcgatcgccctggattggcaagat
tgttatggccccctccccaaagctgccagtcagttattgcgggtcatggaactcaaacaa
ttagccaaaaccctagggttctcgcgcattaagccagaaggcaaacagcacgtcatcctg
gaaacccccatggaggaaccggcctggggacgattaaaatcacatttaccgaaacatttg
cagtctcgtttcgtctatattaccggacgggtcactgtgcgtggcctcggcgtgttgccg
gcagaaaaacaactcgacagtctcattcaatggttggaatgcctacgtccggccctggag
gaccttgaagatgccgacaatttagcagccagtgcctcttag
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