Pseudomonas yamanorum: AK972_2705
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Entry
AK972_2705 CDS
T05821
Name
(GenBank) ATP-dependent DNA ligase clustered with Ku protein, LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pym
Pseudomonas yamanorum
Pathway
pym03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pym00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
AK972_2705
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pym03400
]
AK972_2705
Enzymes [BR:
pym01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
AK972_2705
DNA repair and recombination proteins [BR:
pym03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
AK972_2705
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AMW83505
LinkDB
All DBs
Position
complement(3013425..3015923)
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AA seq
832 aa
AA seq
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MAKPLSEYNAKRDFDVTAEPAGSAPRGRSRAQALTFVIQKHDARNLHYDFRLELDGVLKS
WAVPKGPSLDPSQKRLAVHVEDHPLGYGSFEGSIPAGQYGAGDVIVWDRGVWQPHDDPRK
AYAAGKLKFTLIGEKLAGDWTLVRTRLKGSGDKEQWLLIKENDQQARPVADYDVVQAEPK
SVLSDAMVGRPKKPAAAKKPTRKSSTALPDQLTPQLATLVDRAPEGDWVYEIKFDGYRIL
TRIRDGEVRLFTRNGHDWTDRLPRQVKALEALKLKDSWLDGEVVSLNADGLPDFQALQNA
FDIGRSLDIVYYLFDAPFLEGRDQREVAVEERRAALKSVLTRSRSKLLRFSESFAANQRD
IFESACDLALEGVIGKRAGSLYVSKRSPDWIKLKCRLRQEFIIVGFTRPQGSRSGFGALL
LAVNDDTGLVYAGRVGTGFDQAALKKISEQLKALERDASPLAKPLTSAQARGVHWVEPQL
VSEVQFAEWTREGVVRQAAFVGLRTDKPAEQIVHEQPRAAKSMKEKTRKKATEPGAVVGV
KITHPDRVIDTQSGTQKLQLAQFYEGISEWILPFLRNRPVSLLRAPEGIAGEQFFQKHSE
HLAIPNIKQLDQALDPGHARLMEIDSPAALIGAVQMGTVELHTWGATADKIETPDLFVLD
LDPDPALPWKSMLEAAQLTLSVLDELGLEAFVKTSGGKGLHLVIPLARKDDWDTVKAFAK
AIAQFMTQQLPERFTATSGPKNRIGKIFIDYLRNARGASTVAAYSVRARPGLPVSVPVSR
DELKGLHGAQQWTVANLHERLQNLKKDPWAGYANRQKISKKMWEKLGAHPPG
NT seq
2499 nt
NT seq
+upstream
nt +downstream
nt
atggccaagcccctgagtgaatacaacgccaagcgcgacttcgatgtaaccgccgaacct
gcaggcagtgcgcctcgcggcaggagccgggcccaggccttgaccttcgtgattcaaaag
cacgatgcgcgcaacctgcattacgactttcgcctggaactcgatggcgtgctcaaaagc
tgggcggtgcccaagggcccgagcctggacccgagccagaagcgcctcgccgtgcacgtg
gaagatcatccattgggctacggcagtttcgagggcagcattcccgccggccagtacggc
gcgggtgacgtgatcgtctgggaccgcggcgtgtggcagccccacgacgacccgcgcaaa
gcctacgcggcgggcaagctgaaattcaccctgatcggcgaaaagctcgccggcgactgg
acattggtgcgcacgcggctcaagggcagcggcgataaggagcagtggctgttgatcaag
gagaacgatcagcaggcgcgcccggtggctgactacgacgtggtccaggccgagccgaaa
agcgtgttgagcgatgcaatggtggggcgcccgaaaaaaccagctgctgcgaagaaaccc
acgcgcaaatcctcaactgccctgcccgatcagctcaccccacaattggcgacgctggtg
gaccgtgcaccggagggcgactgggtgtacgagatcaaattcgacggctaccgcatcctc
acgcgtattcgtgacggcgaggtacggctgttcactcgcaatggtcatgactggactgat
cggctgccgcgccaggtcaaggccctggaggcgcttaagctcaaggacagttggctcgac
ggcgaggtggtcagcctgaacgcggatgggttaccggacttccaggcattgcaaaatgcc
tttgatatcggtcgcagcctggacattgtctattacctgtttgatgcgccgtttctggaa
ggtcgtgaccagcgcgaggtcgccgtcgaagagcggcgcgccgcgctgaaaagcgtgctg
acccgcagcaggagcaagctgctgcgcttctccgagtccttcgccgccaatcagcgggat
atcttcgaaagcgcctgtgacctggcgctggagggcgtgatcggaaaacgtgcgggcagc
ctgtacgtctccaagcgcagccccgactggatcaagctcaagtgccggctgcgacaggaa
ttcataatcgtcggtttcacccgtccgcaaggttcacgcagtggctttggcgcactgctg
ctggcggtcaatgacgacaccgggctggtgtatgccgggcgcgtgggtacggggtttgat
caggcggccttaaagaagatcagtgagcagttgaaagccttggagcgcgatgcgtcacca
ctggccaaaccgctgaccagcgcccaggcgcgtggtgtgcactgggtcgaaccgcagttg
gtaagcgaagtgcaattcgccgaatggactcgcgaaggtgtggtgcgccaggcggccttt
gtcgggctgcgtaccgacaagccggcggagcagattgttcatgagcagccgcgggcggcc
aagtcgatgaaggaaaaaacccgtaaaaaggcaactgagcccggtgctgtggtcggggtc
aagatcacccatcccgaccgagtcatcgacacccaaagcggtacacagaaactacaactg
gcgcagttctacgagggcatcagcgaatggatcctgcccttcttgcgtaaccgtcctgtg
tctttgctcagggcaccggaaggcattgcgggtgaacagttttttcagaagcactccgaa
cacctggcgatcccgaatatcaagcaactggatcaggctctggatccgggtcatgcacgg
ctgatggaaatcgacagccccgccgcgctgatcggtgcggtgcaaatgggcaccgtcgag
ttgcacacttggggcgccaccgcggacaaaatcgaaaccccggacctgtttgtgctcgac
cttgacccggacccggccctgccatggaaaagcatgcttgaagcggcgcaactaactctg
tcggtgctggatgagctggggcttgaagcgttcgtcaagaccagcggtggcaagggcctg
cacctggtgataccgctggcgcgcaaggatgactgggatacggtaaaggccttcgccaag
gcgattgcccagttcatgacgcagcagttgccggagcgttttaccgcgacctcaggcccg
aaaaatcgcatcggcaagatctttatcgattacctgcgaaacgcccggggcgccagtacg
gtggcggcctactcggtgcgcgcgcggcccggcctgccggtgtcggtgccggtgagtcgt
gacgagttgaagggtttgcacggcgcccagcaatggaccgtggccaacctgcacgagcga
ttgcagaatttgaagaaggatccgtgggcgggttatgccaatcggcagaagatcagcaag
aagatgtgggagaagctgggcgcgcatccgccaggctga
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