Pseudomonas yamanorum: AK972_4231
Help
Entry
AK972_4231 CDS
T05821
Name
(GenBank) Transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pym
Pseudomonas yamanorum
Pathway
pym03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pym00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AK972_4231
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pym03400
]
AK972_4231
Enzymes [BR:
pym01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AK972_4231
DNA repair and recombination proteins [BR:
pym03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AK972_4231
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
UB2H
ERCC3_RAD25_C
AroM
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AMW85031
LinkDB
All DBs
Position
4674116..4677565
Genome browser
AA seq
1149 aa
AA seq
DB search
MPVLRLPLLPAAAGKQHWGNLPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELSF
FAPDLPVLHFPDWETLPYDLFSPHQDIISQRIASLYRLPELAHGVLVVPITTALHRLAPT
KFLLGSSLVLDIGQKLDVEQMRTRLEASGYRCVDTVYEHGEFAVRGALIDLFPMGSKLPY
RIDLFDDEIETLRTFDPENQRSIDKVDSVKLLPAREFPLQKDAVTRFKARFRERFDVDFR
RCPIFQDLSSGITPAGIEYYLPLFFDETSTLFDYLPQDTQVFSLPGIEQAAENFWNDVRN
RYEERRVDPSRPLLPPAELFLPVEDCFARLKNWPRVVASQQDVDAGAGRERFPAQALPNL
AIEAKANQPLEALSSFLGDFPGRVLFTAESAGRREVLLELLERLKLRPKTVDSWPDFVAS
KDRLAITIAPLDEGLLLDDPALALIAESPLFGQRVMQRRRREKRADANNDAVIKNLTELR
EGAPVVHIDHGVGRYLGLQTLEIDNQVAEFLTMEYAEGAKLYVPVANLHLIARYTGSDDA
LAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFADPKADYATFSAGFA
FEETPDQQTTIDAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAILVPT
TLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVNAAIADLAEGKIDIVIGTHKLLSDDV
KIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIAT
PPARRLSVRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEARI
AIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQ
LRGRVGRSHHQAYAYLLTPPRQQITSDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGEL
LGDGQSGQIQAVGFTLYMEMLERAVKAIRKGEQPNLDQPLGGGPEINLRLPALIPEDYLP
DVHARLILYKRIASATDEDGLKDLQVEMIDRFGLLPEPTKNLVRLTLLKLQAEQLGIKKV
DAGPQGGRIEFEAQTPVDPLVLIKLIQGQPNRYKFEGATLFKFMVPMERAEERFNTLEAL
FERLIPKSA
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgttctgcgtctaccgcttctccctgccgcggcaggtaaacagcactggggcaat
ctgcccggtgccgccctgagcctggccattgccgaggctgccagcgctgccaagcgcttt
accctgctgctcaccgccgacagccaaagtgccgagcggctggaacaggagctgagtttc
ttcgcccccgatttgccggtactgcatttcccggactgggaaaccctgccctacgacctg
ttctcgccgcaccaggacatcatttcccagcgcatcgccagcctgtaccgcctgccggaa
ctggcccacggcgtgctggtggtgccgatcaccacggccctgcatcgcctggcgccgacc
aagttcctgctgggcagcagcctggtgctggatatcggccagaagctcgacgtggaacag
atgcgcacccggcttgaggccagtggttatcgctgcgtcgacacggtgtatgagcacggt
gaattcgctgtgcgtggcgcgctgatcgacctgttcccgatgggcagcaaactgccctac
cggatcgacctgttcgacgacgaaatcgaaaccctgcgtaccttcgatccggaaaaccag
cgttccatcgacaaggtcgactcggtcaagctgctgccggcccgggaattcccgctgcaa
aaagacgcggtcacacgcttcaaggcgcgtttccgcgagcgctttgacgtggacttccgc
cgctgcccgatcttccaggacttgagcagcgggattacgcccgccggtatcgagtactac
ctgccgctgttcttcgacgaaacctccaccctcttcgattacctgccccaagacacccaa
gtgttctcgctgccgggcatcgaacaggcggcggagaacttctggaatgacgtacgcaac
cgttatgaagaacgccgcgtcgacccgtcccgtcctttattgccaccggccgaactgttc
ctgcccgtggaagattgcttcgcccgcctgaaaaactggccgcgcgtagtcgccagccaa
caggatgtggacgccggcgccggccgcgagcgcttcccggcgcaagcactgccgaacctg
gcgattgaagccaaggccaaccagccgctggaagcgctgtcgagtttcctcggtgacttt
cccggccgcgtgctgtttaccgccgagtccgccgggcgccgcgaggtgctgctggagttg
ctggaacgcctgaagctacggccgaaaaccgtcgacagctggccggactttgtcgcgagc
aaggatcgcctggcgatcaccatcgcaccgctggacgaaggcctgctgctggacgacccg
gccctggcactgattgccgagagcccgctgttcggccaacgggtgatgcagcgtcgccgc
cgcgaaaaacgcgccgacgccaacaacgatgcggtgatcaagaacctcaccgaactgcgc
gaaggcgcgccggtggtgcatatcgaccacggtgtgggccgttacctgggcctgcaaacc
ctggagattgataaccaggtcgccgaattcctcaccatggaatacgccgagggcgccaag
ctctacgtgcccgtggccaacctgcacctgatcgcccgctacaccggcagcgacgacgcc
ctcgcgccgttgcaccgcctcggctccgagacctggcagaaagccaagcgcaaggccgcc
gaacaggtacgcgatgtggccgccgagttgctcgacatctatgcccgccgtgccgcccgc
gaaggttatgcctttgccgacccgaaagccgactacgccaccttcagcgcgggcttcgcc
ttcgaagaaaccccggaccagcaaaccaccatcgacgccgtgcgcgccgacatgctggcg
cccaagccgatggaccgcctggtgtgcggcgacgtgggcttcggcaagaccgaagtggcg
atgcgcgcggcgtttattgcggtacacggcggccggcaagtggcgatcctcgtgccgacc
accctgctcgcccagcagcactacaacagcttccgcgaccgctttgccgactggccggtg
accgtggaagtgatgagccgcttcaagtcggccaaggaagtgaacgcagccatcgccgac
ctggcggaaggcaagatcgacattgtcatcggcactcacaagctgctgtcggatgacgtg
aagatcaaaaacctgggcctggtgatcatcgacgaagagcaccgcttcggtgtccgtcag
aaggaacagctcaaggccctgcgcagtgaagtcgatatcctgaccctcaccgccacgccg
atcccgcgcacgctgaacatggcggtgtcgggcatgcgtgacctgtcgatcatcgccacg
ccgccggcgcgtcggttgtcggtgcgcaccttcgtcatggagcagaacaaaagcacggtc
aaggaagccctgctgcgtgagttgctgcgcggcggccaggtgtactacctgcacaacgat
gtgaaaaccatcgagaaatgcgccgccgacctcgccgagctggtaccggaagcaaggatc
gccatcggccacgggcagatgcgcgagcgcgaactcgaacaggtgatgagcgacttctat
cacaagcgcttcaacgtgctgattgcctcgacgatcatcgagaccggcatcgacgtgccg
agcgccaacaccatcatcatcgagcgcgccgacaagttcggcctggcgcagttgcaccag
ttgcgcggccgggtcgggcgcagtcaccaccaggcgtatgcctatctgctgacgccgccg
cgccaacagatcacctccgacgccgagaagcgcctggaagcgatcgccaacacccaggac
ctcggcgccggctttgtgctggccaccaacgacctggaaatccgtggtgccggcgaactg
ctgggggacggccagagcgggcaaatccaggccgtgggtttcaccctttatatggaaatg
ctcgaacgggcagtaaaagccatccgcaagggcgaacaaccgaacctagaccaaccactg
ggtggcggcccggaaatcaacctgcgcttgccggcgttgattcccgaagactacctgccg
gatgtgcacgcacgcctgatcctgtacaagcgcatcgcctcggccaccgacgaagacggc
ctcaaggacctgcaagtggagatgatcgaccgcttcggcctgttgccggaaccgaccaag
aacctggtacgcctgaccctgctcaaattgcaggccgagcaactgggtatcaagaaggtc
gacgccgggccgcagggcgggcgtatcgagttcgaagcccagacgccggtggacccactg
gtgctgatcaagctgattcagggccagcccaatcgctacaagttcgaaggggctacgctg
ttcaaattcatggtgccgatggaacgcgccgaagaacgctttaatacactggaggcgctg
tttgagcgcctcatcccgaaatctgcttga
DBGET
integrated database retrieval system
