Polynucleobacter yangtzensis: PKF023_09630
Help
Entry
PKF023_09630 CDS
T08788
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pyt
Polynucleobacter yangtzensis
Pathway
pyt03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pyt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PKF023_09630 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pyt03400
]
PKF023_09630 (mfd)
Enzymes [BR:
pyt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PKF023_09630 (mfd)
DNA repair and recombination proteins [BR:
pyt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PKF023_09630 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
AroM
ERCC3_RAD25_C
DUF4217
Motif
Other DBs
NCBI-ProteinID:
BDT77160
UniProt:
A0A9C7FAC0
LinkDB
All DBs
Position
complement(956340..959885)
Genome browser
AA seq
1181 aa
AA seq
DB search
MSDALNLAPPIPAPRAGQRFTFSGLVGSADAALIAQNALRYLDKFSVMVIFCAQAQEAQR
LLEEIPAFAPQLKTRLLPDWEILPYDHFSPHQDLVSERLATLYELLNGSCDIVLVPVTTA
LQRLGPPGFLSGYTFFFRQGDKLNEAALKLQLQQAGYDPVSAVMRPGEYSIRGGLFDLFP
MGSNLPYRLDLFGDEIEQIRAFDPDTQRSLYPVKEIRLLPGHEFPFDDASRTAFRGRWRE
VFEGDPSRCSIYKDANLGIPSAGIESYLPLFFEEQSNLFDYFPRSGDPVWLVSIGDVEEA
IKSFWKDTLSRYEFLKHDLDRPILPPKELFLDVDEFFTTSKPYARLAFEKEGSEQNEFSA
VPDIAVHRRDADPINRLRKIVAAEKTRILICSDSAGRKESIRQLFEESNSVAGLDGKPLY
PLKPEGFDSIADFIKSGSLFGLVTAPLFNGFSWPRENLIVVTEAELFTTTARQRRKGKAN
ENADPDMLFKDLSELKIGDPVVHAEHGIGRYQGLVLLNLAPPKEAPIFEEFLHLQYAGQA
TLYVPVQQLEMVTRYAGSDPDSAPLHQLGSGQWDKAKRKAAQQIRDTAAELLGLYAARAI
RKGHAFEFSAHDYAAFAESFGFEETPDQANAIAAVIGDMTSGTPMDRLVCGDVGFGKTEV
ALRASFVAVMGGKQVAILAPTTLLAEQHVATWKDRFADWPVRIVELSRFKTTKEINAALE
AIAKGEADIIIGTHKLLSKETQFANLGLVIVDEEHRFGVRQKDALKALRAEVDILTLTAT
PIPRTLGMAMEGLREFSIIATAPQKRLAIKTFVRREGDGVIREAVLREIKRGGQVYFLHN
EVETIQNRKHALQELIPEARISVAHGQMHERELESVMREFVTQRTNILLCTTIIETGIDV
PTANTIIMHRADKFGLAQLHQLRGRVGRSHHQAYAYLLVPDPEALSKQAQLRLNAIQAME
ELGSGFYLAMHDLEIRGAGEVLGDKQSGEIHEIGFQLYTEMLNRAVKSLRSGKEPDLLSP
LQATTDVNLGVPALLPDDYCPDVHERLSLYKRFASTHDFSELMGLREELVDRFGDLPDQA
KSFYETHRLRLEMTGFGIKKIDATPMSIQIQFIPNPPIDPMKIIQLIQSSKYIQLNGQDK
LKVLPQKDREFEKLEQRLDAIRNILRRLNESAVLSPMKTGQ
NT seq
3546 nt
NT seq
+upstream
nt +downstream
nt
atgtctgatgcattaaatctagcaccccctatacccgctccccgggctgggcagcgcttt
accttttcagggctagttggctcagcagatgccgccctaatagcgcaaaacgcccttcgc
tatctcgacaaattctcagtgatggtgattttttgtgctcaagcacaagaagcccaacgc
ctactagaggaaatccccgcttttgctcctcaactaaaaaccagacttctgcccgattgg
gaaattcttccctatgaccatttttctccgcatcaagacttagtctctgaacgacttgct
actctttatgagttactcaatggcagctgtgacattgttttggtccctgttacaactgct
cttcagagactgggtccccctggttttctgtcaggctacacctttttctttaggcaaggt
gacaaactcaatgaggcagcattaaagctgcagttacaacaagctggttatgatccagta
agtgcagtaatgcgccctggtgaatacagtattcgcggtggcttgttcgatttatttcct
atgggatcaaatcttccttatcgattggatttatttggcgatgagattgagcaaatacgt
gcatttgatcccgatacgcaacgcagcctatacccagtaaaagaaatacgcctgctgcca
gggcacgaattcccattcgatgacgcttctcgtaccgcatttagaggacgctggcgggaa
gtttttgaaggcgatccaagtcgctgctctatttataaggatgccaacctaggcatacct
agcgccggaatcgaatcctacttgccactcttttttgaagaacaatccaatctatttgac
tacttccctaggtctggtgaccccgtttggctagtcagcattggtgatgttgaagaagct
atcaagagcttttggaaagatacgctttcacgttatgagtttctaaaacatgatttagat
cgccccatccttccgcctaaggaattatttttagatgttgatgaattttttacaacatct
aaaccgtatgcacgtttagcttttgaaaaagaaggttctgaacaaaacgaattttcggcg
gtacctgatattgctgtgcatcgtcgagatgcagatcccattaaccgtttacgcaaaata
gttgcagcagaaaaaacacgtatcctaatatgtagcgatagtgcgggacgcaaagaatct
attcgacagcttttcgaagaaagtaattcagttgctggtttagatggcaaacccctctac
ccattaaagcctgagggcttcgatagcattgccgatttcattaagagtggctcgctattt
ggcttggtaactgcaccactctttaacggcttctcttggccaagagaaaatctaatcgtc
gttactgaagcagagctatttactactaccgcaagacaacgacgcaaaggcaaagctaac
gagaatgccgatcctgacatgctatttaaggatctgtcggaactcaagataggcgatccg
gtagtgcacgctgagcacggtattgggcgttatcaaggcttggtactattaaatcttgcg
ccgcctaaagaagcgcctattttcgaagagttcttgcatttgcaatatgcaggtcaagcc
actttgtatgtgcctgttcagcagttagaaatggtgacacgttatgctggctcagatccg
gattcagcaccacttcatcaattaggctcaggccagtgggacaaggcaaaacgtaaggcg
gctcagcaaattcgtgacacagctgcagaattgctaggtttatatgctgcaagggccatt
cgtaagggtcatgcctttgaattctcggctcatgactatgccgcttttgccgaaagcttt
ggctttgaagaaactcccgatcaagctaatgccattgccgccgtgattggtgacatgact
agcggtacaccaatggatcgcttggtttgtggtgatgttggctttggaaagactgaagta
gccttgcgtgctagttttgttgctgtaatgggcggtaaacaagtggctatcttggctccg
actaccctgcttgctgaacaacacgttgccacctggaaagatcgtttcgccgattggcct
gttcgcatcgttgagttatcccgttttaaaacgacaaaagaaattaatgcagccttagaa
gccatcgctaaaggtgaggctgacatcattattggaacccacaagctgctttccaaagag
acgcagtttgcaaatttaggattagtgattgttgatgaagagcatcgctttggtgtccgc
caaaaagatgctctcaaggctcttcgcgctgaagtagacatcttgacgcttactgccacc
ccaattcccagaactttgggtatggcaatggaaggcttgagagaattttccatcattgct
accgcccctcagaaacgcttagcaattaagacttttgtgcgccgtgaaggcgatggcgtc
atacgtgaagccgtgctgcgtgaaattaaacgtggtggccaggtctatttcttgcacaac
gaagtagagaccattcagaatcgcaaacacgctttacaagaattgattccagaggcgcgc
attagcgtagcccatggacaaatgcatgaacgtgaacttgaatccgttatgcgcgagttt
gttacacagcgtaccaatatcttgttgtgcacgactattattgaaactggcattgatgtt
cctacggcaaacaccatcatcatgcatcgtgcagataagtttggactagcccagcttcac
caattgcgtggacgtgtaggccgctcacatcaccaggcttatgcctatctgctcgtccca
gatccggaagcgctcagcaagcaagcgcagttgcgcttgaatgcgattcaggcaatggaa
gaattgggctctgggttctatttggcaatgcatgacctagaaattcgtggtgctggtgaa
gttttgggtgataaacaatcgggtgaaattcatgagattggctttcagctctataccgag
atgctcaatcgcgccgtgaaatcattgcgtagcggtaaagagccagatctcctttcaccg
ctccaagcgacaacagatgtaaatcttggcgtacccgccctgctaccagacgattactgt
cccgatgtccatgagcgactctctttgtacaaacgctttgccagtactcatgacttctct
gaattaatgggtttgcgcgaggaactggtggatcgatttggcgatttgccagatcaagcg
aaatctttttatgaaacacaccgtttacgcctagaaatgacaggttttggcattaaaaag
atcgacgcaacaccaatgtctattcaaattcaatttattccgaatccaccgattgatcct
atgaagatcatccaactgatccaatcatcaaaatatattcaactcaatggtcaagacaag
ttaaaagtgctgcctcaaaaagaccgtgagtttgaaaaattagagcaacgccttgatgct
attaggaatatcctcaggcgcctgaatgaatccgctgttttaagcccaatgaagacgggt
caataa
DBGET
integrated database retrieval system
