Puma yagouaroundi (jaguarundi): 121011283
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Entry
121011283 CDS
T07555
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
pyu
Puma yagouaroundi (jaguarundi)
Pathway
pyu03013
Nucleocytoplasmic transport
pyu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pyu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
121011283 (UPF1)
03015 mRNA surveillance pathway
121011283 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pyu03019
]
121011283 (UPF1)
Enzymes [BR:
pyu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
121011283 (UPF1)
5.6.2.5 RNA 5'-3' helicase
121011283 (UPF1)
Messenger RNA biogenesis [BR:
pyu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
121011283 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
121011283 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_12
UPF1_Zn_bind
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
DEAD
Helicase_RecD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
121011283
NCBI-ProteinID:
XP_040301490
LinkDB
All DBs
Position
Unknown
AA seq
1091 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGPGGPGGGGAG
GPVGAGAGAAAGQLDAQVSGTWRRRKPGPGLGAREPAPSPALRRRPKLEVVKSQTLGVNY
LSFPGFSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKADSVVVL
LCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQINKLEE
LWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLKESQTQD
NITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNY
GDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLG
HEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVY
HLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRN
MDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAK
MQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFER
LVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMF
FYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYM
QFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRAR
YGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGA
RFMTTAMYDAREAIIPGSVYDRSSQGRPSNMYFQTHDQIGMISAGPSHVAAMNIPIPFNL
VMPPMPPPGYFGQANGPAAGRGTPKGKTGRGGRQKNRFGLPGPSQTNLPNSQASQDVASQ
PFSQGALTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAY
QHGGVTGLSQY
NT seq
3276 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggaggcgtacgggcccagttcgcagacgctcaccttcctggacactgaggaa
gccgagctgcttggcgccgacacacagggctcggagttcgagttcaccgacttcaccctc
cccagccagacgcagacgcccccaggtggccccggcggccccggaggaggtggtgcggga
ggcccggtcggcgctggcgcgggcgctgcggccggacagctggacgcgcaggtgagcggc
acatggcggcgccggaagcccgggccgggcctcggcgcccgggaacctgccccgagtccc
gcactccggcggcgtccgaaattggaagtggtgaaaagccaaactttgggtgttaactat
ttatcatttcctggtttcagccacattgtaaatcacctcgtgagggcaaaatgcaaagag
gtgactctgcacaaggatgggcccctgggggagacagttctggagtgttacaactgtggc
tgccgcaatgtcttcctcctcggcttcatccctgccaaagcggactccgtagtggtgctc
ctgtgcaggcagccctgcgccagtcagagcagcctcaaggacatcaactgggacagctcc
cagtggcagcccctgatccaggaccgctgcttcctctcttggctggtcaagatcccttct
gagcaggagcagctgcgggcccggcagatcactgctcagcagatcaacaagctggaggag
ctctggaaggaaaatccttctgccaccttggaggatctggagaagcccggtgtggatgag
gagccgcagcacgtcctcttgcggtatgaggacgcctaccagtaccagaacatattcggc
cctctggtcaagctggaggccgactacgataagaaactgaaagagtcccagactcaagat
aacatcacggtcaggtgggacctgggccttaacaagaagagaatcgcctacttcactttg
cccaagactgactctgacatgcggctcatgcagggagatgagatatgcctgagatacaaa
ggggatctggcacccctgtggaaagggatcggccacgtcatcaaggtccctgataattat
ggcgatgagatcgccattgagcttcggagcagtgtgggcgcccctgtggaggtgactcac
aacttccaggtggatttcgtgtggaagtcaacctcatttgataggatgcagagcgctttg
aaaacgtttgctgtggatgagacctccgtgtcaggctacatctaccacaaactactcggc
cacgaggtggaggatgtgatcatcaagtgccagctgccgaaacgcttcacggcacagggt
ctcccagacctcaaccactctcaggtttacgctgtgaagactgtgctgcagagaccactg
agcctgattcaggggccaccgggcacggggaagaccgtgacctctgccaccatcgtctac
cacctggctcggcagggcaacgggcctgtgctcgtctgtgctccgagtaacatagctgtg
gatcagctgactgagaagatccatcagactgggctgaaagtcgtgcggctctgcgcgaag
agccgtgaggccattgattccccggtgtcattcctggccctgcacaaccagatcaggaac
atggatagcatgccggagctacagaagctgcagcagctgaaggacgagactggggagctg
tcctctgccgatgagaagcggtaccgggccctgaagcgcaccgccgagcgggagctgctc
atgaatgcagatgtcatctgctgcacgtgtgtgggtgcaggggacccgaggctcgccaag
atgcagttccgctccatcttaattgacgagagcacccaggccaccgaaccagagtgcatg
gtccctgtggttcttggcgccaagcagctcatcctcgtgggcgaccactgccagctgggc
cctgtggtgatgtgcaagaaggccgccaaggctggactgtcccagtcgctcttcgagcgc
ctggtggtgctgggcatccgtcccatccgcctccaggtccagtatcggatgcacccagcg
ctcagtgccttcccgtccaacatcttctacgagggctctcttcagaacggcgtcaccgca
gcggatcgagtgaagaaggggtttgacttccagtggccccaacctgataagccaatgttc
ttctacgtgacccagggccaagaggagatcgccagctcaggcacctcctaccttaacagg
acggaagctgcaaatgtggagaagatcaccacgaagctgctaaaggcgggtgccaagcct
gaccagatcggcatcatcacgccctatgagggccagcgctcctacctggtgcagtacatg
cagttcagcggctccttgcacaccaagctctaccaggaggtggagattgccagtgtggat
gcgttccagggacgagagaaggacttcatcattctttcctgtgtgcgagccaatgagcac
caaggcattgggtttttaaacgaccccaggcggcttaatgtggctctgaccagagcaagg
tatggggtcattatcgtgggcaacccaaaggccttgtccaagcagccactctggaaccac
ctgctgaactactacaaggagcagaaggtgctggtggaggggcccttgaacaaccttcgg
gagagcctcatgcagttcagcaagcccaggaagctggtcaacaccatcaacccgggagcc
cgcttcatgacaacagccatgtatgatgctcgggaggccattatcccaggatcagtctat
gatcggagcagccagggccggccctcaaacatgtacttccagacccacgaccagatcggc
atgatcagtgcgggacccagccacgtggctgccatgaacattcccatccctttcaacctg
gtcatgccacccatgccaccaccagggtattttggacaagccaacgggccagccgcaggc
cggggtaccccaaaaggcaagactggtcgtggggggcgccagaagaaccgctttgggctc
cctggacccagccagacgaatctccccaacagccaggccagccaggatgtggcatcacag
cccttctcccagggcgccctgacacagggctacatctccatgagccagccctcccagatg
agccagcccggcctctcccagcccgagctgtcccaggacagttaccttggcgatgagttt
aagtcacagattgatgtggcgctgtcgcaagactccacgtaccaaggggagcgggcgtac
cagcacggcggagtgacagggctgtcccagtactag
DBGET
integrated database retrieval system
