Puma yagouaroundi (jaguarundi): 121018881
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Entry
121018881 CDS
T07555
Symbol
LIG1
Name
(RefSeq) DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
pyu
Puma yagouaroundi (jaguarundi)
Pathway
pyu03030
DNA replication
pyu03410
Base excision repair
pyu03420
Nucleotide excision repair
pyu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pyu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
121018881 (LIG1)
03410 Base excision repair
121018881 (LIG1)
03420 Nucleotide excision repair
121018881 (LIG1)
03430 Mismatch repair
121018881 (LIG1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pyu03032
]
121018881 (LIG1)
03400 DNA repair and recombination proteins [BR:
pyu03400
]
121018881 (LIG1)
Enzymes [BR:
pyu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
121018881 (LIG1)
6.5.1.6 DNA ligase (ATP or NAD+)
121018881 (LIG1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
121018881 (LIG1)
DNA replication proteins [BR:
pyu03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
121018881 (LIG1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
121018881 (LIG1)
DNA repair and recombination proteins [BR:
pyu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
121018881 (LIG1)
NER (nucleotide excision repair)
Other NER factors
121018881 (LIG1)
MMR (mismatch excision repair)
Other MMR factors
121018881 (LIG1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
DNA_ligase_A_N
DDR
PucR
Motif
Other DBs
NCBI-GeneID:
121018881
NCBI-ProteinID:
XP_040313868
LinkDB
All DBs
Position
Unknown
AA seq
697 aa
AA seq
DB search
MQRSIMSFFHPKKEGKAKKPEKETSSRETEPPPKVALKEWNGEVPENDSPVKRPGRKAAR
VLGSEGEEEDEALTPSKGQKPAPGSPQVSPPSPVTFPEDSPPLSNTSPAGLSPTGIPKRR
TARKQLPKRPIQDILEEQSKDEDREAKRKKEEAEIPSLSQARPGAGSGERWGRLAGQEEA
GSSPRAPDTHWPAPPQSTAKKMDVIKGLFVACRHSEARFIARALSGRLRLGLAEQSVLAA
LAQAVSLTPPGQDFPPAVVDAGKGRTAEARKTWLEEQGMILKQTFCEVPDLDRIIPVLLE
HGLERLPEHCRLSPGVPLKPMLAHPTRGVGEVLKRFEEAAFTCEYKYDGQRAQIHVLEGG
EVKIFSRNQEDNTGKYPDIIGRIPKIKLPSVTSFILDTEAVAWDREKKQIQPFQVLTTRK
RKEVDAADIQVQVCLYAFDLIYLNGESLVREPLSRRRQLLRENFVQTEGEFVFATSLDTK
DTDQIAEFLEQSVKDSCEGLMVKTLDVDATYEIAKRSHNWLKLKKDYLDGVGDTLDLVVI
GAYLGRGKRAGRYGGFLLAAYDEESEELQAICKLGTGFSDEELEDHFQSLQALVLPTPRS
YVRADGAVAPDHWLDPSAVWEVKCADLSLSPIYPAARGLVDSEKGISLRFPRFIRVREDK
KPEEATTSAQVASLYKKQSQIQNQQGADLDSDPEDFY
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atgcagcggagtatcatgtcatttttccatcccaagaaggagggcaaagcgaaaaagccg
gagaaagagacctccagcagagagacagagccacctccaaaggtggcgctgaaggaatgg
aacggagaggtgcctgagaacgattctccagtgaagaggccagggcggaaggcggcccgg
gtcctgggcagtgaaggggaggaggaggacgaagccctcacgccctccaaaggccagaag
ccggccccaggctctccacaggtctcccctcccagccctgtcacatttcccgaggacagc
cctcccctctccaacacctctcctgcgggcctctccccaacggggatcccgaagcggcgc
acagctcggaagcagcttcctaaacggccgattcaagatatcctggaagaacagagcaag
gatgaggacagagaagcaaagaggaagaaggaagaagcagagatccccagcctctcacaa
gcgcgaccgggcgctgggagtggggagaggtgggggcggctcgctggccaggaggaggcg
gggtcctcaccccgcgccccagacacccactggcctgccccacctcagtccacagccaag
aagatggacgtcatcaaaggcctctttgtcgcctgccgtcactcagaagcccgattcatc
gccagagccctgagcggacggctacgcctcgggctggcagagcagtcggtgctggccgcc
ctcgcccaggccgtgagcctcacgccccctggccaagatttccccccggctgtcgtggac
gctgggaagggccggacagcggaggcccggaagacgtggctggaggaacagggcatgatc
ctgaagcagacgttctgcgaggtgcccgacctggaccggatcatccccgtgctgctggag
cacggcctggagcgcctcccggagcactgcaggctgagcccaggggtccccctgaaaccg
atgctggcacaccccacccgcggtgtcggcgaggtcctgaaacgctttgaggaggcggct
ttcacctgcgagtacaaatacgacgggcagagggcacagatccatgtcctggaaggcggg
gaggtaaagatcttcagcaggaatcaggaagacaataccggaaagtacccggacatcatc
ggccgcatccccaagattaaactgccatcagtcacatccttcatcctggacacggaagcc
gtggcttgggaccgggaaaagaagcagatccagccgttccaagtgctcaccacccgcaaa
cgcaaggaggtggacgcagcagacatccaggtccaggtttgtctatatgccttcgacctc
atctacctcaatggagagtccctggtacgcgagcccctttcccggcgccgacagctgctc
cgggagaacttcgtgcagacggagggcgagttcgtcttcgccacctctctggacaccaag
gacacagaccagatcgccgagttcttggagcagtccgtgaaagattcctgcgaggggctg
atggtaaagaccctggacgtcgacgccacctacgagatcgccaagagatcacacaactgg
ctcaagctgaagaaggactacctcgatggcgtgggcgacaccctggacctcgtggtgatc
ggcgcctacctgggccgtgggaagcgggccggccgctacgggggtttcctgctggcggcc
tacgacgaggagagcgaggagctccaggccatatgcaagctcggaactggcttcagtgac
gaggagctggaggaccatttccagagcctccaggcgctggtgctgcccaccccacgctcc
tacgtccgggccgacggcgccgtggcccccgatcactggctggaccccagcgccgtgtgg
gaggtgaaatgcgccgatctgtccctgtcccccatctaccccgctgcccggggcctggtg
gatagcgagaaggggatctccctccgtttcccccggtttattcgcgtccgcgaagacaag
aagccggaggaggctaccaccagtgcccaggtggcctctctgtataagaagcagagtcag
attcagaaccagcagggcgcggacttagactccgacccggaagatttctactag
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integrated database retrieval system
