KEGG   Pyrobaculum sp. WP30: PYWP30_00076
Entry
PYWP30_00076      CDS       T04013                                 
Name
(GenBank) DNA ligase I, ATP-dependent (dnl1)
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
pyw  Pyrobaculum sp. WP30
Pathway
pyw03030  DNA replication
pyw03410  Base excision repair
pyw03420  Nucleotide excision repair
pyw03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pyw00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    PYWP30_00076
   03410 Base excision repair
    PYWP30_00076
   03420 Nucleotide excision repair
    PYWP30_00076
   03430 Mismatch repair
    PYWP30_00076
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pyw03032]
    PYWP30_00076
   03400 DNA repair and recombination proteins [BR:pyw03400]
    PYWP30_00076
Enzymes [BR:pyw01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     PYWP30_00076
    6.5.1.6  DNA ligase (ATP or NAD+)
     PYWP30_00076
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     PYWP30_00076
DNA replication proteins [BR:pyw03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    PYWP30_00076
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     PYWP30_00076
DNA repair and recombination proteins [BR:pyw03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     PYWP30_00076
   NER (nucleotide excision repair)
    Other NER factors
     PYWP30_00076
   MMR (mismatch excision repair)
    Other MMR factors
     PYWP30_00076
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Other DBs
NCBI-ProteinID: AKT33749
UniProt: A0A0K1DYU5
LinkDB
Position
71454..73208
AA seq 584 aa
MLFGELVKALAAVEATTQRTAMVKLLVSLFKKAKPEEVDKIVYFILGDLRPPWEGVELGV
AEKLCLRALSKASGVPPAELEALYKKSGDVGEAAKRALSAGRRPGLLAFGQQRPLEVSEV
YDTLLKIAQAAGEGAQDLKVSLLSSLFARASPEEGKYIARFVVGKLRLGVADMTLIDALS
EAFGVGKEALERAYHVYPDLGRLARHIAGGRPLDEVRITPGVPVLPMLAQRLSSASEILA
KLDGVAVCEYKYDGERAQIHIRGGSVKIFSRRLEDITHAYPDVAKAVREAVSAGEAILEG
EIVAVDPDTGDMLPFQELMHRKRKHEVAAAVEMYPAVLHLFDVLYVDGEDLTAEPLMHRR
VKLSEVVKETDKVFIARWRVFDNAEDVDTFFHEAVSLGMEGLVCKSPNSIYEMGARGWNW
IKYKRDYRSEMIDTVDLVVVGAFYGRGKRAGLYGAFLAAAYDPSTDMFYTVCKVGSGFTD
ADLKKMYEMLQPYKIPHRHPRVVSKMEADVWFVPQVVVEVIGAEITLSPLHTCCLGAVKP
EVGLAVRFPRFTGRYRTDKSPEQATTAAEMLELYRRQKKVAQPE
NT seq 1755 nt   +upstreamnt  +downstreamnt
gtgttgtttggggaacttgtcaaggccttggcggctgtcgaggccaccacccagaggaca
gccatggttaagctcctggtctcgttgtttaaaaaggcgaagccggaggaggtggacaag
attgtgtatttcatactaggcgacttgagacctccctgggagggtgttgagctcggcgtg
gcggagaagctctgcctaagggccttgtcgaaggcctcgggggtgccccccgccgagctg
gaggctttgtataaaaagagcggcgacgtgggcgaagccgctaagagggccttgtccgcc
ggcaggaggcctggcctcttggcgtttggccagcagaggcctttggaggtctccgaggtt
tacgacacgcttctgaagatagcgcaggcggcgggggagggcgcgcaggatttgaaggtg
tctctcctctcctcgctgttcgcccgcgcgtcgccggaggaggggaagtacattgctagg
ttcgtcgtggggaagctgaggctcggcgttgccgacatgacgcttatagacgccttgtct
gaggccttcggcgttgggaaggaggctcttgagcgggcttaccacgtgtatcccgacctg
gggcgccttgctagacacatcgccgggggtaggccccttgacgaggttaggatcaccccg
ggcgtccccgtgctccccatgttggcgcagaggctttcttctgcctccgagatcttggcc
aagctcgacggggttgcggtatgtgagtataaatacgacggagagagggcgcagatacat
atacgcggcggctccgtgaagatcttcagcaggaggcttgaggacataacccacgcgtat
cccgacgtcgcgaaggcggtgcgggaggccgtctccgcgggggaggccatactggaggga
gagatcgtggcggtggacccagacacgggggatatgttgccttttcaggagctgatgcac
cggaagaggaagcacgaggttgccgccgcggtggagatgtaccccgccgtcttgcacctc
ttcgacgtgctctatgtagacggcgaagacctcaccgcagagcctttgatgcaccgccgc
gtgaagctttcggaggtcgtgaaggagaccgacaaggtcttcatagcgaggtggagggtt
ttcgacaacgccgaagacgtcgacacgtttttccacgaggccgtctccctaggcatggag
gggcttgtgtgcaagtcccccaactccatatacgaaatgggggccagggggtggaactgg
ataaaatacaagagggactacagaagcgagatgatagacacggtggatctcgtggtcgtg
ggcgccttctacggcaggggcaagcgggccggcctatacggcgcgttcctagccgccgcc
tacgatccctccaccgacatgttctacactgtgtgtaaggtgggtagcggcttcacagac
gcggacctaaagaagatgtacgaaatgttgcagccttacaagatcccgcacagacaccca
agggtcgtgtctaagatggaggctgacgtgtggttcgtgccccaggtagtcgtagaggtg
ataggcgcggagatcaccctgtcgccgcttcacacctgttgcctaggggccgtcaagccg
gaggtagggcttgcggtgcgcttcccgaggttcaccggacgctacagaaccgacaagtcg
ccggagcaggcaaccacagccgcggagatgctggagctgtataggaggcagaagaaggtg
gctcagccggagtag

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