Pyramidobacter sp. YE332: RAH42_07665
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Entry
RAH42_07665 CDS
T09677
Name
(GenBank) helicase-related protein
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pyy
Pyramidobacter sp. YE332
Pathway
pyy03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pyy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RAH42_07665
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pyy03400
]
RAH42_07665
Enzymes [BR:
pyy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RAH42_07665
DNA repair and recombination proteins [BR:
pyy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
RAH42_07665
BRITE hierarchy
Motif
Pfam:
DEAD
Helicase_C
UvrB_inter
TRCF
CarD_TRCF_RID
ResIII
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
WOL39038
LinkDB
All DBs
Position
complement(1624351..1627293)
Genome browser
AA seq
980 aa
AA seq
DB search
MPTRQEALALDSDLKVLEVGESRLLEEPPLDSEKLRNGDSFLRRGHTLSGWLNAESGMLV
TTPGALVTPFRFGKAGLTLAAGARLGRDALASWLAENGYRRAELVWQPGEFAVRGGIVDF
FDPSEKAPLRVEFFDEDVESIRFFQPRSQRSFQNLPHFIVRSVNRSEDEERERAWGSYGT
LLVQPRRLEDSFAAFCELYNALVEEKQRLAPDAFERFLLDTGRLPRLRVSPPGEGVHQDT
LDFGVVPYFRGDLRAARAYVDSHLQAGFKIHIASRNLTGDSFPEQVFFHRGSSLSGGVVV
KDRNEIWISDAELFGINEVAEEEINHGMPLDLEASLKKDQWVIHEKYGVCQLVGTSVENF
GGQNYETIVLRFADNERLIIPTAELFRLTPWNGNGVPELDSLKSKRWRSAWKKAEAQIEA
EAQGLLNLYAQRELADGRAFGRDGDLLKRFEESFPYKETVDQLRAIRDVKHDMERRWPMD
RLIVGDVGYGKTEVVLRAAIKAVENGAQAAIIAPTTVLALQHYRTCVARVGELPIRVELL
SRMIPKKKQKEILDETANGRVDILIGTHRLFQDDIRFKDLGLLIIDEEHRFGVKHKERLK
VAHPGLDVLSLSATPIPRSLSMALRGIRDISVIATSPRGRGEVFTVTSRWNPGLAHDAIL
RELMRGGQVYYLHNHIDDIEQIAARLANRFPGHRTAVAHGQMGERELEKTMNEFYDGRIE
ILVCTTIIESGLDVPRANTLIVDDVRRLGLAQMHQIRGRIGRRSENAYALFFYESEESGG
QTRERLEALGAVGSQNGGYQLAQRDLEIRGAGEILGTEQHGFKERIGYTLYLKKLKEYVD
QLRGIEIKPALVDLAMPLVIPVDYVPQAELRIGLYRRLLSPLSAREYEEMQAELLDRYGS
LPEQVQGLLDAALVRGEGGALGIEKLRVSKAFVALEGPLREDLFLPPRWIAKSGARLGPG
GVNGLHAAAGELMKKFVSRP
NT seq
2943 nt
NT seq
+upstream
nt +downstream
nt
gtgccgacgcgccaggaggcgctggctctggattccgatttgaaagtgctggaggtcgga
gaaagccgtctgctcgaagagccccccttggacagcgagaagctgcggaacggggattcg
tttctgcggcgcggtcatacgctttcgggatggctcaacgcagagagcgggatgttggtg
accaccccgggagcgttggtcacgccgtttcgcttcggcaaagcgggactgactttggcg
gccggcgcgcgcttgggacgagatgcgcttgcgtcctggcttgccgaaaacggctatcgg
cgggcggagttggtgtggcagcccggcgagtttgcggttcgcggcggtatcgtcgatttt
ttcgatccctccgaaaaggcgcctctgcgcgtcgaattttttgacgaggacgtggaatcg
atccgtttttttcagccccgctcgcagagaagttttcaaaatctgccgcatttcattgtg
cgcagcgtcaatcgcagcgaagacgaagagcgcgaaagggcctggggcagttacggaacg
ctgctggtccaaccccgcagactcgaggacagctttgcggctttttgcgagctctacaac
gcgcttgtcgaagaaaaacaacggcttgcgcccgacgcgttcgaaaggtttttgctggac
acggggcgtttgccgcggttgagagtatcgcctcccggggagggagttcaccaggacacc
ctcgatttcggcgtcgttccttatttccggggcgatctgagagcggcccgcgcgtacgtc
gacagccatctgcaggcgggattcaagatccatatcgccagccgcaacttgaccggggat
tcgtttcctgagcaggtctttttccatcggggcagcagtttaagcggcggcgtcgtggtg
aaggaccggaacgagatctggatttccgacgcggaacttttcggcatcaacgaagttgcc
gaagaagagatcaatcacggcatgcctttggaccttgaggcgagcttgaagaaggaccaa
tgggtcattcatgaaaaatatggcgtctgccagcttgtgggaacatcggttgagaatttt
ggcggccagaattacgaaaccatcgttctgcggttcgccgacaacgaaaggctgattatc
cctaccgctgagctttttcgcctcaccccgtggaacggtaacggcgtccccgagctcgac
agcctcaagtcgaagcgctggcgttcggcatggaaaaaagcggaagcgcagatcgaagcg
gaagcgcaggggctcctgaatctctacgcccagcgcgaactggccgacgggcgggctttt
ggacgcgacggcgacctgctgaaacgctttgaagagagcttcccctacaaagaaaccgtc
gatcagcttcgggcgatccgcgacgtcaagcacgacatggaacgccgctggcctatggat
cgtctcattgtcggagacgtcggttacggcaaaaccgaggtcgtgctgcgcgcggcgatc
aaggccgtcgaaaatggcgcgcaggcggcgattattgcgccgacaacggttttggccctc
cagcattatcgcacctgcgtcgccagagtcggcgaacttccgatccgtgtcgagctgctt
tcgcggatgatccctaagaaaaagcagaaggaaattctcgacgaaacggcaaacggccgt
gtcgatatcctgatcggcacccatcgcctttttcaggacgacattcgattcaaagacttg
ggactgctgataatcgacgaagaacaccgttttggcgtcaaacataaagagcggctgaaa
gtggcgcaccccgggctggacgtgctttctctttcggcgacgccgattcccagaagcctt
tccatggctctgcgcggcatccgggacatttccgtgatcgccacttcgccgcgggggcgc
ggcgaggtctttaccgtgacctcccgctggaatcccggtctggcgcatgacgcaattctc
cgcgagctcatgcgaggcgggcaggtatactatctgcataaccacatcgacgacatagaa
cagatcgcggcgcgtcttgccaaccgttttcccggacaccgcacggccgtcgctcacggg
caaatgggagagcgcgagctcgagaaaacgatgaacgagttctatgacggcagaattgaa
atcctggtgtgtacgacgatcatcgaaagcgggctcgacgtgccgcgggccaacacgctg
atcgtcgacgacgtcaggcgtctcggcctggcacagatgcatcagatacgcggccgcatc
gggcggcgcagcgagaacgcttacgccctgtttttttatgaatccgaagaaagcggcggg
cagacccgcgaacgcctcgaagccctgggcgccgtcggctcgcagaatggcggttatcag
ctggcgcagcgcgacctcgagatccgcggggcgggcgagatcctcggaacggaacagcat
ggcttcaaggaacgcattggctacaccctttatctgaaaaaattgaaggagtacgtcgac
cagctgcgagggatcgaaataaagcccgcgctggtcgatttggccatgccgctggtgatc
cctgtggattatgtcccgcaggcggaactgcgcatcgggctgtacagacgcttattgtcc
cccttgagcgctcgggaatacgaggaaatgcaggcggaactccttgatcggtatggctct
ttgcccgagcaagttcaagggctgcttgacgcggctctggtccgcggcgaaggcggggct
ctcgggatagagaagctccgggtctcgaaggcttttgtcgctcttgagggacctttgcgg
gaagacctcttcctgcctccgcgctggatcgcgaaaagcggcgcgcgcctcggccccggc
ggcgtcaacggactgcatgccgccgccggggaactgatgaaaaaattcgtttcccggccg
tga
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