Pseudomonas zarinae: HU749_010575
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Entry
HU749_010575 CDS
T07889
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pza
Pseudomonas zarinae
Pathway
pza03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pza00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HU749_010575 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pza03400
]
HU749_010575 (mfd)
Enzymes [BR:
pza01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HU749_010575 (mfd)
DNA repair and recombination proteins [BR:
pza03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HU749_010575 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
UB2H
ERCC3_RAD25_C
AroM
Motif
Other DBs
NCBI-ProteinID:
QXH96807
LinkDB
All DBs
Position
complement(2376952..2380401)
Genome browser
AA seq
1149 aa
AA seq
DB search
MPVLRLPLLPAAAGKQHWGNLPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELSF
FAPDLPVLHFPDWETLPYDLFSPHQDIISQRIASLYRLPELSHGVLVVPITTALHRLAPT
QFLLGSSLVLDIGQKLDVEQMRTRLEASGYRCVDTVYEHGEFAVRGALIDLFPMGSKLPY
RIDLFDDEIETLRTFDPENQRSIDKVQSIRLLPAKEFPLQKDAVTRFKARFRERFDVDFR
RCPIFQDLSSGITPAGIEYYLPLFFEETSTLFDYLPQDTQVFSLPGIEQAAENFWNDVRN
RYEERRVDPSRPLLPPAELFLPVEDCFARLKSWPRVVASQQDVETGVGRERFPAKALPDL
AIEAKATQPLAALASFLDAFPGRVLFTAESAGRREVLLELLERLKLRPKTVDSWPDFVAS
KDRLAITIAPLNDGLVLDDPALALVAESPLFGQRVMQRRRREKRADAANDAVIKNLTELR
EGAPVVHIDHGVGRYLGLATLEIDSQAAEFLTLEYAEGAKLYVPVANLHLIARYTGSDDA
LAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFADPKADYETFSAGFP
FEETVDQQTTIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGKQVAILVPT
TLLAQQHYNSFRDRFADWPVTVEVMSRFKSTKEVNAAVADLAEGKIDIVIGTHKLLQDDV
KFKSLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIAT
PPARRLSVRTFVMEQNKSTIKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEARI
GIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQ
LRGRVGRSHHQAYAYLLTPPRQQITPDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGEL
LGDGQSGQIQAVGFTLYMEMLERAVKSIRKGEQPNLDQPLGGGPEINLRVPALIPEDYLP
DVHARLILYKRIASASDEEGLKDLQVEMIDRFGLLPEPTKNLVRTTLLKLKAEQLGIKKV
DGGPNGGRIEFEAQTPVDPLVLIKLIQGQPKRYKFEGATMFKFMVPMERAEERFNTVEAL
FERLTPTTA
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgttctgcgtcttccgcttctccctgccgcggcaggtaaacagcactggggcaac
ctgcccggtgccgccctgagcctggccatcgccgaggctgccagcgctgcaaagcgtttc
accctgctgctgaccgccgacagccaaagcgccgagcggctggaacaggagctgagtttc
ttcgccccggatttgccggtcttgcatttcccggactgggaaaccctgccctacgatctg
ttttcgccgcaccaggacatcatttcccagcgaatcgccagcctttatcggctgccggaa
ctcagtcatggcgttttggtagtgccgatcaccacggccctacatcgcctggcaccgacc
caattcctgctgggcagcagcctggtgctggacatcggccagaagcttgatgtcgagcaa
atgcgtacccgccttgaggccagtggctatcgttgtgtcgacacggtgtacgaacacggc
gagttcgcggtacgcggcgccttgatcgacctgttcccgatgggcagcaaactgccttat
cgcatcgacctgttcgatgacgaaatcgagaccctgcgcaccttcgacccggaaaaccag
cgctccatcgacaaagtgcagtcgatccgcctgttgccggccaaggagttcccgctgcag
aaagacgccgtgacccgcttcaaggcacgctttcgcgagcgcttcgatgtggatttccgg
cgctgcccgatcttccaggacctgagcagcgggatcacgcccgccggcatcgagtactac
ctgccgctgtttttcgaagaaacctccaccctgttcgattacctgccccaggacacccag
gtgttttccctgccgggcatcgagcaggctgcggaaaacttctggaacgacgtgcgcaac
cgctacgaagaacgtcgcgtcgatccttcccggcctctattaccgccggccgagctgttc
ctgccggtggaagactgttttgcccgcctcaagagctggccaagggtggtggcgagccag
caggacgtggaaaccggcgtcggccgtgaacgtttcccggccaaggcattaccggacctg
gccatcgaagccaaggccacgcaacctttggcggcgctggcgagctttctcgatgcattc
cccggtcgcgtgttgttcaccgccgaatccgcgggtcgtcgcgaagtgctgctggagctg
cttgagcgcctgaagctgcgaccgaagacggtggacagctggccggacttcgtcgccagc
aaggatcgcctggcgattaccatcgcaccgctgaacgatggcctggtcctggatgacccg
gccctggccctggtcgccgaaagtccgttgttcggccaacgcgtcatgcagcgccgccgt
cgcgagaaacgcgccgacgctgccaacgacgctgtcatcaagaacctcaccgaactgcgc
gaaggcgcgcccgtggtgcacatcgaccatggcgtaggccgctacctgggcctggcgaca
ctggaaatcgacagccaggccgccgagttcctgaccctggaatacgccgagggcgccaag
ctctacgtgccggtggcgaacctgcacctgatcgcccgctacaccggcagcgacgacgcc
ctggccccgctgcaccgcctgggctcggaaacctggcagaaagccaagcgcaaggcggcc
gaacaggtgcgcgacgtggccgccgaactgctggacatctacgcccgccgcgcggcccgc
gagggctatgccttcgccgatccgaaagccgactacgaaaccttcagcgccggtttcccg
ttcgaagaaaccgtcgaccagcagaccaccatcgaagccgtgcgcgccgacatgctcgcg
cccaagcccatggaccgactggtgtgtggcgacgtgggcttcggcaagaccgaagtggcg
atgcgcgccgcgttcattgccgtgcatggtggcaagcaggtggcgatcctggtgccgacc
accctgctcgcccagcagcactacaacagtttccgcgaccgctttgccgactggccagtg
accgtggaagtgatgagccgtttcaaatccaccaaggaagtgaacgccgccgtggccgac
ctggccgagggcaagatcgacatcgtcatcggcacgcacaagctgctgcaggacgacgtg
aagttcaagagcctggggctggtgatcatcgacgaagagcaccgctttggcgtgcgccag
aaagaacagctcaaggccctgcgcagcgaagtcgacatcctgaccctgaccgccacgccg
atcccgcgcacgttgaacatggcggtgtcgggcatgcgcgacctgtcgatcatcgccacg
ccgccggcccggcgcctgtcggtgcgcacgttcgtcatggagcagaacaaaagcacgatc
aaggaagccctgctgcgtgagctgctgcgcggcggccaggtctattacctgcacaacgac
gtgaagaccatcgagaaatgcgccgccgacctggccgaactggtaccggaagcgcgcatc
ggcatcggccacggacagatgcgcgagcgcgaactcgaacaggtgatgagcgacttctac
cacaagcgcttcaacgtgctgatcgcctcgaccatcatcgagaccggcatcgacgtgcca
agcgccaacaccatcatcatcgagcgcgccgacaaattcggcctggcccagctgcaccag
ttgcgcggccgagtcgggcgtagccaccaccaggcctatgcctacctgttgacgccaccg
cgccagcagatcaccccggatgcggaaaagcgcctggaagccatcgccaatacccaggac
ctcggcgccggtttcgtgctggccaccaacgacctggaaatccgcggtgccggcgaattg
ctcggcgacggccagagcggccagatccaggccgtcggcttcaccctgtacatggaaatg
ctcgaacgcgcggtcaagtcgatccgcaagggcgaacagccgaacctcgatcaacccctg
ggcggcggaccggaaatcaacctgcgggtgccggcgctgatcccggaagattacctgccg
gacgtccacgcgcggctgatcctctacaagcgcatcgcctcggccagcgacgaggaaggc
ctcaaggacctgcaggtggagatgatcgaccgcttcggcctgctgccggaaccgaccaag
aacctggtgcgcactacgctgctcaagctcaaggccgaacaactgggcatcaagaaagtc
gacggcggccccaacggcggccggatcgagttcgaggcccagacgccggtcgatccactg
gtgctgatcaagttgatccagggccagcccaaacgctacaagttcgaaggtgccacgatg
ttcaaattcatggtgcccatggagcgcgcggaagagcgcttcaataccgtagaggcgctg
ttcgagcgcctcactccgaccactgcttga
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integrated database retrieval system
