Stutzerimonas zhaodongensis: KQ248_15880
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Entry
KQ248_15880 CDS
T09079
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pzd
Stutzerimonas zhaodongensis
Pathway
pzd03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pzd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
KQ248_15880 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pzd03400
]
KQ248_15880 (ligD)
Enzymes [BR:
pzd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
KQ248_15880 (ligD)
DNA repair and recombination proteins [BR:
pzd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
KQ248_15880 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Myosin_N
Motif
Other DBs
NCBI-ProteinID:
QWV15992
LinkDB
All DBs
Position
complement(3483511..3486072)
Genome browser
AA seq
853 aa
AA seq
DB search
MALDEYNRKRDFTATPEPDGENGTRKRRKARALQYCIQKHDATRLHYDFRLELDGTLKSW
AVPKGPSLDPKSRRLAVHVEDHPLEYATFEGSIPKGHYGAGDVIVWDRGVWIPEGDPQEG
YRKGKLKFSLEGEKLSGTWNLVRTRMDGGKEQWFLIKSNDDAARPESEYDIVEALPDSVL
SDRTLIPRTRGKAKPAAAAKAVKTPARRRSRKDAPNATLTGAKQAPLPESFKPQLATLVE
SVPDGDWRYEIKFDGYRIMARIEPGRVQLFTRNGHDWTQKMPQQAEALAGLGLESAWLDG
EVVVPDDDGTPDFQALQNAFEAGRSGSILYYLFDMPYLNGMDLREVPLEERRAALSQVLD
ADESELLRFSADFTEQPESMLESACQMKLEGLIGKRGGSTYVSRRSNSWVKIKCKNRQEF
VIVGYTDPKGTRSGFGALLLGLQDEQGQLIYAGKVGTGFNQATLESLHAKLKPLEVDKSP
LAKAPPAADVRGAHWLKPELMCEVAYAEMTRQGVVRHSVFHGLRSDKPAKAIIHERPAKT
AKASSLEKPKQRNPASNTAGGKIKISNPERIIDKSIGATKMELARFYAEVAPWALPHLAQ
RPLALVRAPEGIDGELFFQKHTEKLSIPHITQLDTALFPNHAALMTIDTAEALISAAQMG
TIELHTWNAVAPVLDHPDRFVLDLDPDPALPWKRMVEATQLTQTLLDELGLQSYLKTSGG
KGLHVMVPLEPVHSWTEVKAFSQAIAQYMAKLMPQHFSAVSGPKNRIGKIFIDYLRNSKG
ASTVAAYSVRAREGLAVSVPIHRDELADLKGANIWTIRNLMPRLEEQGEDPWAGIDETGQ
QISAEMRERLGMK
NT seq
2562 nt
NT seq
+upstream
nt +downstream
nt
atggccctggatgagtacaaccgaaagcgcgacttcactgcgacccctgagcctgatggc
gaaaacggcacgcgcaaacgccgcaaggctcgtgcgcttcagtactgcatccagaagcac
gacgcgacgcggctgcactatgacttccgactcgagctcgacgggacgcttaaaagctgg
gctgtcccgaaggggccctccctcgacccgaaatcgcgccgtctggccgtgcatgtcgaa
gatcatccgcttgagtacgcgacgttcgaaggtagcattccgaaaggtcattacggcgcg
ggagatgtaatcgtctgggatcgcggtgtctggattcccgagggcgacccgcaagagggt
tatcgcaagggcaaactgaagttcagtctagaaggtgaaaagctgagcggcacctggaat
ctggttcgcacgcgcatggacgggggaaaggaacaatggtttctgatcaagtccaacgac
gacgctgccaggccagagagcgaatacgatatcgtcgaagcgctgccagacagcgtgctg
agtgatcggaccctgataccccgcacgcgtggtaaagccaaaccggcagccgcagccaaa
gcggtcaagacacccgcccgtagacgcagccgcaaggacgcgccgaacgcgactttgacg
ggcgccaagcaggcgccgttaccggagagcttcaagccccaactcgcgacgttggttgag
tcagtccctgacggggattggcgctacgaaatcaagttcgacggttaccgcatcatggct
cgtatcgagccgggcagggtgcagcttttcacgcgtaacggtcacgactggacgcagaag
atgccacagcaggccgaagcgctcgccgggcttggtttggaatcggcctggctggacggc
gaagtggtggtacccgacgatgacggcacgccggatttccaagcgctgcagaacgcgttc
gaagctggccgcagcggcagcatcctctattacctgttcgatatgccctatctgaatggc
atggacttgcgtgaggtcccactggaggagcgccgagcagccctgagtcaggtgctggat
gctgacgaaagcgagttgttgcgcttctccgctgatttcaccgaacagccggagagcatg
ctcgagagcgcttgccagatgaagctggaagggctgatcggcaagcgcggaggcagtacc
tacgtgtcccggcgcagcaacagctgggtcaagatcaagtgcaagaaccgtcaggaattc
gtcatcgtcggctacaccgacccgaagggtacgcgtagtggcttcggtgcgctgctgctg
gggctgcaggacgaacaaggtcagctgatatacgccggcaaggtgggcaccggcttcaac
caggccactctggagagcctgcacgccaagctcaaaccgctcgaagtcgacaagagccct
ttggcaaaggcgccgccagctgccgacgtacgcggtgctcattggctcaagcctgagctg
atgtgcgaggtcgcctatgcggagatgacccggcagggcgtggtgcgccattcggttttt
catggcctgcgttcggacaagccggccaaagccatcattcacgagcgcccagcgaaaaca
gccaaggcgtctagcctggagaagccgaaacaacgcaatcccgcatcaaacacggcgggc
ggcaagatcaagatctcgaaccctgaacgcatcatcgacaagtcgatcggtgcaaccaaa
atggagctggcacgcttttatgccgaagtcgccccatgggcgttgccgcacctggcacag
cggccgcttgccctggtccgtgcgccagagggaatcgacggtgagctgtttttccaaaag
cacaccgagaagctgagcattccgcatatcacccaattggacaccgcactgtttcccaac
catgcggcattgatgaccatcgacaccgccgaagcgctgatcagcgcggcgcagatgggc
accatcgagctgcacacctggaatgccgtggcgccggtgctcgatcacccggatcgcttc
gtgctcgatctcgaccctgaccctgcgctgccttggaagcgcatggtagaggccactcaa
ctcacccagaccttgctggatgaattgggtctgcagtcttatctcaagaccagtggtggc
aaaggcctgcacgtgatggtgccgttggagccggtccacagctggacggaggtcaaagcc
ttcagtcaggccatagcgcagtacatggccaagctcatgccgcagcatttctcagcggtc
agcggccccaagaaccggatcggcaaaatattcatcgactacctgcgcaacagtaagggc
gcgagcaccgtcgccgcctattcggttcgggcgcgcgagggacttgccgtttcagtgccc
attcaccgcgatgagctggcggatctcaagggcgcgaatatctggaccattcgaaatctc
atgccgcgcctggaagagcagggcgaagacccctgggcggggatcgacgagacagggcag
caaatcagcgctgagatgcgtgaacggctaggcatgaaataa
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