KEGG   Pseudomonas zeae: HU754_018525
Entry
HU754_018525      CDS       T07528                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
pze  Pseudomonas zeae
Pathway
pze03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:pze00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    HU754_018525 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pze03400]
    HU754_018525 (ligD)
Enzymes [BR:pze01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     HU754_018525 (ligD)
DNA repair and recombination proteins [BR:pze03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     HU754_018525 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S RNA_ligase mRNA_cap_enzyme
Other DBs
NCBI-ProteinID: QXI09822
UniProt: A0A9E6NLQ3
LinkDB
Position
complement(4230659..4233250)
AA seq 863 aa
MNRNLDDYNRMRDFSATSEPAAVKRSGGKTAAEHALQFCIQKHDASHLHYDFRLELDGAL
KSWAVPKGPSLDPKVKRLAVHVEDHPLDYATFEGNIPEGHYGAGDVIVWDRGVWIPLEDP
HKAYAKGKLKFELQGEKLGGIWNLVRTHMPGKKEQWFLIKHQDSAARPQDDYDVLVAEPD
SVLSERTLVGKPKLAAEQSKPLKKPAAKTRKAATGKLNGAQKAKLPAQLKPELATLVDSA
PEGQWSYEIKFDGYRIMARIDHDQVQLFTRNGHDWTHKLPQQAAALAALGLESAWLDGEM
IVANEHGVPDFQALQNAFEAGSSGNILYYLFDLPYLNGVDLREVPVEERRAALATVLGSH
EQPLLRFSEAFDETPDALLNSACQMQMEGLIGKRLGSPYVSRRSGDWIKLKCKHRQEFVI
VGYTDPKGSRSAFGALLLGLHDRDSGELRYAGKVGTGFNESTLKSILAQLKPLQVKKAAV
VNPPSGFEVKGVHWLKPKLLAEVAFAEMTKDGSVRHAVFHGLRDDKPAKGITEERAKPVK
TAAKKSATKKAPKKAPASSAETAPSQLGLANGKVRITHPDRVIDAVSGTTKMQLAEYYTS
VAEWILPQLKDRPVALVRAPDGIAGELFFQKNAERLAIPGITTLDKDVTGQPVMLINNAE
ALIGAVQMSTVELHTWNATTVDLDKPDRFVLDLDPDPALPWKSMVEATALTLTVLDELGL
KAFLKTSGGKGIHLVVPLTRKLGWDEVKDFSHAIVSHIAKLLPERFSAVSGPKNRVGRIF
IDYLRNGLGATTICAYAARTREGLPVSVPLFREEVAELKGGNQWNVHNVHERLAEVGDEP
WADMKKTRQSITAEMRKRLGLKK
NT seq 2592 nt   +upstreamnt  +downstreamnt
atgaacaggaacctcgacgactacaaccgcatgcgcgatttttcggcgacctcggaaccg
gctgccgtcaagcgctcgggaggtaaaaccgctgccgagcatgctttgcagttctgcatc
cagaagcacgacgcttcacacctgcattacgactttcgcctggaactcgatggcgcactg
aagagctgggcggtgccgaaagggccgtcactcgaccccaaggtcaagcggctggcggtg
catgtcgaggatcatccgctggattacgcaacgttcgagggcaacattcccgaaggacat
tacggcgccggtgatgtgattgtctgggatcgtggcgtgtggataccgctggaagatccg
cacaaggcctacgccaagggcaagctcaagttcgagctgcaaggcgagaagctcggcggt
atctggaacctggtgcgcacgcacatgccgggcaaaaaagaacaatggtttttgatcaag
catcaggacagcgccgcgcggccgcaggatgattacgacgtgttggtggccgaaccggac
agtgtgctgagcgaacgcacgttagtgggcaaacccaaactggccgccgagcaaagcaaa
ccgctgaaaaagcccgcggcgaagacacgcaaagctgcgaccggcaagctcaacggtgcg
caaaaagccaaactgccggcacaactgaaaccggaactggccacgctggtcgacagcgcg
ccggaagggcagtggagttacgagatcaaattcgatggctaccggatcatggcgcgcatc
gatcatgatcaggtgcaactgttcactcgcaacggtcatgactggacgcacaagttgccg
caacaggccgcagccctggccgcgctgggattggaatcggcgtggctcgacggcgaaatg
atcgtcgccaacgaacacggcgtacccgactttcaggccctgcaaaatgcttttgaagct
ggaagcagcggcaacattctctactacctgttcgatctgccgtatctcaacggtgtcgac
ctgcgtgaagtgccggtcgaggaacgtcgcgccgcgctggccacggtgctcggcagtcat
gagcaaccgttgttgcgcttctccgaggccttcgacgaaaccccggatgcgctgctcaac
agcgcctgccagatgcagatggaaggcctgatcggcaaacgcctcggctcgccctatgtg
tcgcggcgcagcggcgactggatcaagctcaagtgcaaacatcgccaggaattcgtcatc
gtcggctacaccgatccgaaaggttcgcgcagtgctttcggcgcgttgctgctggggctg
catgatcgtgacagcggcgagttgcgctacgccggcaaagtcggcaccggtttcaacgag
tcgacgttgaaaagcattctggctcaactcaaaccgttgcaggtgaagaaggcggcggtg
gtcaatccacccagcggcttcgaggtcaaaggcgtgcactggctcaagccgaaactgctg
gcggaagtcgcattcgccgaaatgaccaaggacggttcagtgcgccacgccgtgttccat
ggcttgcgcgatgacaaaccggccaagggcatcactgaggagcgagcgaaaccggtgaag
actgcagcgaagaaatcagccacgaagaaagcgccgaaaaaagccccggcgagcagcgca
gaaaccgcgccgtcgcagctcggactggccaacggcaaggtgcgcatcactcacccggat
cgcgtgatcgacgcggtcagcggcaccaccaagatgcaactggccgagtattacaccagc
gttgccgaatggattctgccgcagctcaaggatcgtccggtggcattggtgcgcgcgccg
gacggcatcgccggtgagttgtttttccagaaaaacgccgaacgcctggcgatccccggc
attaccacgctggacaaagacgtcaccgggcaaccggtgatgctgatcaacaatgccgag
gcgcttatcggcgcggtacagatgagcacagtcgaactacacacctggaacgcgaccacg
gtcgatctggacaagcccgatcgcttcgttctcgacctcgatccggatccggcactgcca
tggaaaagcatggtcgaagcgacggcactgacattgaccgtacttgatgaactgggcctc
aaggcgtttctcaaaaccagcggcggcaagggtattcacctggtggtgccgctgacccgt
aaactcggttgggacgaggtcaaggacttcagccacgccatcgtcagtcatatcgccaag
ctgttgccggagcgcttttctgcggtgtccgggccgaaaaaccgcgtcgggcggatcttt
atcgattacctgcgcaacggtctgggcgccaccactatctgcgcttacgccgcgcgcacc
cgcgaaggcttgccggtgtcggtgccgctgtttcgcgaagaggtcgccgagctcaagggc
ggcaatcagtggaacgtgcacaacgttcatgagcggttggctgaggtcggtgacgagccg
tgggccgacatgaagaaaacccgccagagcatcaccgccgaaatgcgcaaacgcctgggg
ctgaaaaagtga

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