Pseudomonas zeae: HU754_018525
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Entry
HU754_018525 CDS
T07528
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pze
Pseudomonas zeae
Pathway
pze03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pze00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
HU754_018525 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pze03400
]
HU754_018525 (ligD)
Enzymes [BR:
pze01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
HU754_018525 (ligD)
DNA repair and recombination proteins [BR:
pze03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
HU754_018525 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
QXI09822
UniProt:
A0A9E6NLQ3
LinkDB
All DBs
Position
complement(4230659..4233250)
Genome browser
AA seq
863 aa
AA seq
DB search
MNRNLDDYNRMRDFSATSEPAAVKRSGGKTAAEHALQFCIQKHDASHLHYDFRLELDGAL
KSWAVPKGPSLDPKVKRLAVHVEDHPLDYATFEGNIPEGHYGAGDVIVWDRGVWIPLEDP
HKAYAKGKLKFELQGEKLGGIWNLVRTHMPGKKEQWFLIKHQDSAARPQDDYDVLVAEPD
SVLSERTLVGKPKLAAEQSKPLKKPAAKTRKAATGKLNGAQKAKLPAQLKPELATLVDSA
PEGQWSYEIKFDGYRIMARIDHDQVQLFTRNGHDWTHKLPQQAAALAALGLESAWLDGEM
IVANEHGVPDFQALQNAFEAGSSGNILYYLFDLPYLNGVDLREVPVEERRAALATVLGSH
EQPLLRFSEAFDETPDALLNSACQMQMEGLIGKRLGSPYVSRRSGDWIKLKCKHRQEFVI
VGYTDPKGSRSAFGALLLGLHDRDSGELRYAGKVGTGFNESTLKSILAQLKPLQVKKAAV
VNPPSGFEVKGVHWLKPKLLAEVAFAEMTKDGSVRHAVFHGLRDDKPAKGITEERAKPVK
TAAKKSATKKAPKKAPASSAETAPSQLGLANGKVRITHPDRVIDAVSGTTKMQLAEYYTS
VAEWILPQLKDRPVALVRAPDGIAGELFFQKNAERLAIPGITTLDKDVTGQPVMLINNAE
ALIGAVQMSTVELHTWNATTVDLDKPDRFVLDLDPDPALPWKSMVEATALTLTVLDELGL
KAFLKTSGGKGIHLVVPLTRKLGWDEVKDFSHAIVSHIAKLLPERFSAVSGPKNRVGRIF
IDYLRNGLGATTICAYAARTREGLPVSVPLFREEVAELKGGNQWNVHNVHERLAEVGDEP
WADMKKTRQSITAEMRKRLGLKK
NT seq
2592 nt
NT seq
+upstream
nt +downstream
nt
atgaacaggaacctcgacgactacaaccgcatgcgcgatttttcggcgacctcggaaccg
gctgccgtcaagcgctcgggaggtaaaaccgctgccgagcatgctttgcagttctgcatc
cagaagcacgacgcttcacacctgcattacgactttcgcctggaactcgatggcgcactg
aagagctgggcggtgccgaaagggccgtcactcgaccccaaggtcaagcggctggcggtg
catgtcgaggatcatccgctggattacgcaacgttcgagggcaacattcccgaaggacat
tacggcgccggtgatgtgattgtctgggatcgtggcgtgtggataccgctggaagatccg
cacaaggcctacgccaagggcaagctcaagttcgagctgcaaggcgagaagctcggcggt
atctggaacctggtgcgcacgcacatgccgggcaaaaaagaacaatggtttttgatcaag
catcaggacagcgccgcgcggccgcaggatgattacgacgtgttggtggccgaaccggac
agtgtgctgagcgaacgcacgttagtgggcaaacccaaactggccgccgagcaaagcaaa
ccgctgaaaaagcccgcggcgaagacacgcaaagctgcgaccggcaagctcaacggtgcg
caaaaagccaaactgccggcacaactgaaaccggaactggccacgctggtcgacagcgcg
ccggaagggcagtggagttacgagatcaaattcgatggctaccggatcatggcgcgcatc
gatcatgatcaggtgcaactgttcactcgcaacggtcatgactggacgcacaagttgccg
caacaggccgcagccctggccgcgctgggattggaatcggcgtggctcgacggcgaaatg
atcgtcgccaacgaacacggcgtacccgactttcaggccctgcaaaatgcttttgaagct
ggaagcagcggcaacattctctactacctgttcgatctgccgtatctcaacggtgtcgac
ctgcgtgaagtgccggtcgaggaacgtcgcgccgcgctggccacggtgctcggcagtcat
gagcaaccgttgttgcgcttctccgaggccttcgacgaaaccccggatgcgctgctcaac
agcgcctgccagatgcagatggaaggcctgatcggcaaacgcctcggctcgccctatgtg
tcgcggcgcagcggcgactggatcaagctcaagtgcaaacatcgccaggaattcgtcatc
gtcggctacaccgatccgaaaggttcgcgcagtgctttcggcgcgttgctgctggggctg
catgatcgtgacagcggcgagttgcgctacgccggcaaagtcggcaccggtttcaacgag
tcgacgttgaaaagcattctggctcaactcaaaccgttgcaggtgaagaaggcggcggtg
gtcaatccacccagcggcttcgaggtcaaaggcgtgcactggctcaagccgaaactgctg
gcggaagtcgcattcgccgaaatgaccaaggacggttcagtgcgccacgccgtgttccat
ggcttgcgcgatgacaaaccggccaagggcatcactgaggagcgagcgaaaccggtgaag
actgcagcgaagaaatcagccacgaagaaagcgccgaaaaaagccccggcgagcagcgca
gaaaccgcgccgtcgcagctcggactggccaacggcaaggtgcgcatcactcacccggat
cgcgtgatcgacgcggtcagcggcaccaccaagatgcaactggccgagtattacaccagc
gttgccgaatggattctgccgcagctcaaggatcgtccggtggcattggtgcgcgcgccg
gacggcatcgccggtgagttgtttttccagaaaaacgccgaacgcctggcgatccccggc
attaccacgctggacaaagacgtcaccgggcaaccggtgatgctgatcaacaatgccgag
gcgcttatcggcgcggtacagatgagcacagtcgaactacacacctggaacgcgaccacg
gtcgatctggacaagcccgatcgcttcgttctcgacctcgatccggatccggcactgcca
tggaaaagcatggtcgaagcgacggcactgacattgaccgtacttgatgaactgggcctc
aaggcgtttctcaaaaccagcggcggcaagggtattcacctggtggtgccgctgacccgt
aaactcggttgggacgaggtcaaggacttcagccacgccatcgtcagtcatatcgccaag
ctgttgccggagcgcttttctgcggtgtccgggccgaaaaaccgcgtcgggcggatcttt
atcgattacctgcgcaacggtctgggcgccaccactatctgcgcttacgccgcgcgcacc
cgcgaaggcttgccggtgtcggtgccgctgtttcgcgaagaggtcgccgagctcaagggc
ggcaatcagtggaacgtgcacaacgttcatgagcggttggctgaggtcggtgacgagccg
tgggccgacatgaagaaaacccgccagagcatcaccgccgaaatgcgcaaacgcctgggg
ctgaaaaagtga
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