Pseudomonas zeae: HU754_020570
Help
Entry
HU754_020570 CDS
T07528
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pze
Pseudomonas zeae
Pathway
pze03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pze00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HU754_020570 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pze03400
]
HU754_020570 (mfd)
Enzymes [BR:
pze01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HU754_020570 (mfd)
DNA repair and recombination proteins [BR:
pze03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HU754_020570 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
SNF2-rel_dom
ERCC3_RAD25_C
AAA_22
AroM
Motif
Other DBs
NCBI-ProteinID:
QXI10198
UniProt:
A0A9E6NL99
LinkDB
All DBs
Position
4684063..4687512
Genome browser
AA seq
1149 aa
AA seq
DB search
MPVLRLPLLPAEAGKQHWGNLPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELSF
FAPDLPVLHFPDWETLPYDLFSPHQDIISQRIASLYRLPELAHGVLVVPITTALHRLAPT
KFLLGSSLVLDVGQKLDVEQMRARLEASGYRYVDTVYEHGEFTVRGALIDLFPMGSKLPY
RIDLFDDEIETLRTFDPENQRSIDKVDSVKLLPAREFPLQKDAVTRFKARFRERFDVDFR
RCPIFQDLSSGITPAGIEYYLPLFFDETSTLFDYLPQDTQVFSLPGIEQAAENFWNDVRN
RYEERRVDPSRPLLPPAELFLPVEDCFARLKSWPRVVASQQDVETGVGRERFPAQALPNL
AIEAKATQPLAALSAFLDEFPGRVLFTAESAGRREVLLELLERLKLRPKNVDSWPDFVAS
KDRLAITIAPLDEGLMLDEPALALVAESPLFGQRVMQRRRREKRSDVSNDAVIKNLTELR
EGAPVVHIDHGVGRYLGLTILEIDNQAAEFLTLEYAENAKLYVPVANLHLIARYTGSDDA
LAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFADPKADYATFSAGFP
FEETPDQQSTIEAVREDMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAILVPT
TLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVNAAIADLAEGKIDIVIGTHKLLSDDV
KIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIAT
PPARRLSVRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEARI
GIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQ
LRGRVGRSHHQAYAYLLTPPRQQITSDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGEL
LGDGQSGQIQAVGFTLYMEMLERAVKSIRKGEQPNLDQPLGGGPEVNLRVPALIPEDYLP
DVHARLILYKRIASATDEEGLKDLQVEMIDRFGLLPEPTKNLVRITALKLQAEQLGIKKV
DGGPQGGRIEFEAQTPVDPMTLIKLIQSQPKRYKFEGATMFKFQVPMERPEERFNTVEAL
FERLLPKSV
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgttctgcgtctaccgctactccctgccgaggcaggtaaacagcattggggcaat
ctgcccggtgctgccctcagtctcgcgattgccgaggctgccagcgctgccaagcgcttc
accctgctactgaccgccgacagccagagcgctgaacgactggaacaggagctgagtttc
ttcgccccggatttgcccgtgctgcatttccctgactgggaaaccctgccgtacgacctg
ttctcgccgcaccaggacatcatttcccagcgcatcgccagcttgtataggctgccagag
ctggcgcatggcgtgctggtggtgccgatcaccacagcgttgcaccggttggcgccgacc
aagttcctgctcggcagcagcctggtgctggatgtcggccagaagctcgatgttgaacag
atgcgtgcgcggctcgaagccagtggctatcgctacgtagacacggtttatgagcacggc
gagttcaccgttcgcggcgcactgatcgatctattcccgatgggcagcaaactgccctat
cgcatcgacctgttcgacgacgaaatcgaaaccctgcgtaccttcgacccggaaaaccag
cgctccatcgacaaggtcgattcggtcaagctgctgccggcccgtgagtttccgctgcag
aaagacgcagtcacccgcttcaaggcgcgtttccgcgagcgtttcgacgtggatttccga
cgctgcccgatctttcaggatctgagcagcggcatcaccccggccgggatcgagtattac
ctgccgctgtttttcgacgaaacctcgacgctgttcgattacctgccgcaggacacgcaa
gtgttctcgctgccgggcatcgagcaagcggcggaaaatttctggaacgacgtgcgcaat
cgttatgaagagcgccgcgtcgacccttcgcgtcctttattgccgccggcagaattgttc
ctgccggtggaagactgtttcgcccgtttgaagagctggccacgtgtggtcgccagtcag
caagacgtggaaaccggcgtcggccgcgaacgcttccccgcgcaggcactgccgaatctg
gcgatcgaagccaaagccacacaaccgctggcggcgctgtcggcgttcctcgatgagttc
cccggtcgcgtgctgttcaccgccgaatccgcgggccgtcgtgaagtcctgctggagttg
cttgagcgcctgaagctgcgaccgaaaaatgtcgacagttggcctgattttgtcgcgagc
aaggatcgtctggcgatcaccattgccccgctcgacgaaggcctgatgctggatgagccg
gcgctggcactcgtcgcggaaagtccgctgttcggtcagcgtgtgatgcaacgtcgtcgc
cgcgagaaacgcagcgacgtcagcaatgacgcggtgatcaagaacctcaccgagctgcgc
gaaggcgcgccggtggtgcacatcgatcacggtgtcggccgctatctgggcctgacgatt
ctggaaatcgacaatcaggcggccgaattcctcaccctcgaatacgccgagaacgccaag
ctttacgtgcccgtagccaacctgcatttgatcgcgcgttacaccggtagcgacgatgcg
ctggccccgctgcaccgccttggttcggaaacctggcagaaggccaagcgcaaagccgcc
gaacaggtgcgcgatgttgccgctgaactgctcgatatttacgcccggcgtgccgctcgc
gaaggttatgcattcgccgacccgaaagccgattacgcgacgttcagcgccgggttcccg
ttcgaagaaaccccggaccagcaatcgaccatcgaagccgtgcgcgaagacatgctcgcg
ccgaaaccgatggatcgtctggtctgcggcgacgtcggtttcggcaagaccgaagtggcc
atgcgtgcggcattcatcgccgtgcacggcggtcgtcaggtggcgattctggtgccgacc
accctgctcgcccagcaacactacaacagcttccgcgaccgcttcgccgactggcccgtg
acagtagaagtaatgagccgcttcaaatcggccaaggaagtgaacgcggcgatcgccgat
ctggctgaaggcaaaatcgacatcgtcattggcacgcacaagctgctatccgacgatgtg
aaaatcaaaaacctcgggctggtgatcatcgacgaagaacaccgtttcggtgtgcgtcag
aaagaacagctcaaggccctgcgcagcgaagtcgacattcttaccctgaccgccacgccg
attccgcgcacgctgaacatggcggtgtcgggcatgcgcgacctgtcgatcatcgccacg
ccgccggcgcgacgcctgtcggtgcgcactttcgtcatggagcagaacaagagcacggtc
aaagaggccctgctccgcgaactgctgcgcggcggccaggtttactacctgcacaacgat
gtgaaaaccatcgagaagtgcgccgccgatctcgccgaactggtgccggaagcccgcatc
ggcatcggtcacggacagatgcgcgagcgcgaactcgaacaggtgatgagcgacttctat
cacaagcgcttcaacgtgctgatcgcctcgaccatcatcgagaccggcatcgacgtgccg
agcgccaacaccatcatcatcgagcgcgccgacaagttcggcctggcacaactgcaccag
ttgcgtggtcgtgtcggccgtagtcaccaccaggcttacgcctacctgctgacgccgccg
cgccagcaaatcacctcggacgcggaaaagcgtctggaagcgattgccaacactcaggat
ctcggtgccggtttcgtcctggcgaccaacgacctggaaatccgtggtgccggcgaactg
ctcggcgatggccagagcgggcagattcaggccgtgggcttcacgttgtatatggagatg
ctggaacgcgcggtgaagtcgatccgcaagggcgagcaaccgaacctcgatcagccgctg
ggcggtggcccggaagtcaacttgcgagtgccggcgctgattccggaagactacctgccg
gatgttcacgcgcgtctgattctgtacaaacgcatcgcttcggccaccgacgaggaaggc
ctcaaggatctgcaagtcgagatgatcgaccgtttcggcttgttgccggaaccgacgaag
aatctggtgcgcatcacggcgttgaaattacaggctgagcaactgggtatcaagaaggtc
gatggcgggccgcaaggtgggcgcatcgagttcgaagcgcagacgccggtcgacccgatg
acgctgatcaagctgatccagagccagccaaaacgctacaaattcgaaggcgcgacgatg
ttcaaattccaggtaccgatggaacgtccggaagagcgctttaatactgtagaggcgctg
tttgagcgcctcctcccgaaatctgtttga
DBGET
integrated database retrieval system
