Phenylobacterium zucineum: PHZ_c3259
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Entry
PHZ_c3259 CDS
T00750
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pzu
Phenylobacterium zucineum
Pathway
pzu03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pzu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
PHZ_c3259
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pzu03400
]
PHZ_c3259
Enzymes [BR:
pzu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
PHZ_c3259
DNA repair and recombination proteins [BR:
pzu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
PHZ_c3259
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
Motif
Other DBs
NCBI-ProteinID:
ACG79668
UniProt:
B4RAS0
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All DBs
Position
3695109..3697772
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AA seq
887 aa
AA seq
DB search
MADKLARYRAMRDFSKTAEPAGAEKTKASRRLRFVIQKHAATRLHYDFRLELDGVFLSWA
VTKGPSLNPADRRLAVQTEDHPLDYGDFEGTIPKGQYGGGTVMLWDRGYWEPEGDARAML
KKGDLKFTLDGERLKGSWVLVRMKRREREKRDNWLLIKHHDGWSVEDHGEFLVEGETSSV
ASGRAMDEIEAGKGKGPTKFMTGKGRASGKDVWQSNRADPKAPPPAAEKAAPAPKLKAAA
LPGFVAPQLAKSVDRPPQGAGWGHEIKFDGYRLQLRVENGKATLKTRAGLDWTAKFKEIA
ADAKPLPDGLYDGEACALDHNGSPDFPALQAALSEDRTADLVFFVFDALFLDGEDLRALP
LTERKSRLEAAVAAAGKRLERRIRYVAHFETAGDAVLKSACRMSLEGIVSKRLDAPYRSG
RSDTWQKSKCRAGHEVVIGGWTGERGQLRSLLVGVNRDGKLVYVGRVGTGFGRETVGRVL
PRLEKVASDKSPFTGPNAPRKSGDINWARPELVAEIEFAGFTGDGNVRQASFKGLREDKP
AAEVEAETPAKTQLAEPAPAGKAKAGPRTAPAKPATKPRAKPRAKPRAGDNVVMGVVLSN
PDKALWPDDGKGGVVTKLDLARYLETVGPWMMEHIKGRPCSIIRMPDGIEGQQRFFQRHA
GKGSSALISEVQVFGDHKPYIQIDRIEALAALAQIGAVEYHPWNCQPGQPEVPGRLVFDL
DPDEAIPFQRVIDAAWEVKERLESLGLAAFCKTTGGKGLHVVTPLKAGKGEMDWPTAKAF
ARDVCLAIAADAPDRYVVNMAKAKRKGRIFLDYLRNDRMSTAVAPLSPRGRPLAPVSFPL
TWDQVKTGLEPKRWTIRTAPALLKKTKAWADYCDAERPLKDAIRKLK
NT seq
2664 nt
NT seq
+upstream
nt +downstream
nt
ttggccgacaagctcgcccgctaccgggccatgcgcgacttctccaagacggccgagccg
gccggggccgagaagacgaaggcctcccggcgcctgcgcttcgtgatccagaagcacgcg
gccacccgcctgcactacgacttccggctcgagctggacggggtgttcctgtcgtgggcg
gtgaccaaagggccgtcgctgaaccccgccgaccgccggctggccgtgcagaccgaggac
caccccctcgactacggcgacttcgaaggcacgatccccaagggccagtacggcggcggc
acggtgatgctgtgggaccgcggctactgggagcccgagggcgacgccagggccatgctg
aagaagggcgacctgaagttcaccctggacggcgagcggctgaagggctcgtgggtgctg
gtccgcatgaagcgccgcgagcgcgagaagcgcgacaactggctgctgatcaagcaccac
gacggctggtcggtggaggaccacggcgagttcctcgtcgagggagagaccagctcggtc
gcctcgggccgcgccatggacgagatcgaggccggcaagggcaagggtccgacgaaattc
atgaccggcaagggccgcgcctcgggcaaggacgtctggcagtccaaccgcgccgacccg
aaggctccgccgcccgccgccgaaaaggccgcgccggcgccgaagctgaaggccgctgcc
ctgcccgggttcgtggccccccagctcgccaagtcggtggaccggccgccgcagggcgcc
ggctggggccacgagatcaagttcgacggctatcggctgcagctgcgcgtggagaacggc
aaggcgacgctgaagacccgcgcgggcctggactggacggccaagttcaaggagatcgcc
gccgacgcgaagcccctgcccgacggcctctacgacggcgaggcctgcgccctggaccac
aacggctcgcccgattttccggccctgcaggcggcgctgtccgaggacaggaccgcggac
ctggtgttcttcgtgttcgacgccctgttcctggacggcgaggacctgcgcgccctgccg
ctgaccgagcgcaagagccggctggaggcggccgtggcggcggccggcaagcgcctggag
cggcggatccgctacgtcgcccacttcgagacggccggcgacgcggtgctgaagtcggcc
tgccgcatgtcgctggagggcatcgtctccaagcgtctggacgcgccctaccgctcgggc
cgctccgatacctggcagaagtccaagtgccgcgccggccacgaggtggtgatcggcggc
tggaccggcgagcgcggccagctccgctcgctgctggtgggcgtgaaccgcgacggcaag
ctcgtctatgtcggccgggtaggcaccggcttcggccgcgagacggtgggccgcgtgctt
ccgcgcctggagaaggtcgcctcggacaagagccccttcacgggcccgaacgcccctcgc
aagagcggcgacatcaactgggcccggcccgaactggtcgccgagatcgagttcgccggc
ttcaccggcgacggcaacgtccgccaagcgtccttcaagggcctgcgcgaggacaagccc
gccgccgaggtggaggccgagacgcctgcgaagacgcagctcgccgagcccgcgccggcc
ggcaaggcgaaagccgggcccagaacggcgccggcgaaacccgcgaccaagcctagggcc
aagcccagggccaagcccagggcgggagacaacgtcgtcatgggcgtcgtcctgtccaat
ccggacaaggcgctctggcccgacgacggcaagggcggcgtggtcaccaagctggacctc
gcccgctacctggagacggtcggcccgtggatgatggagcacatcaagggccggccctgc
tcgatcatccgcatgccggacgggatcgagggccagcagcggttcttccagcgccacgcc
ggcaagggatcgtccgcgctgatctccgaggtgcaggtcttcggcgaccataagccgtac
atccagatcgaccggatcgaggccctggccgccctcgcccagatcggggccgtggaatac
cacccgtggaattgccagcccggccagcccgaggtcccggggcggctcgtcttcgacctt
gatcccgacgaggccatcccgtttcagcgggtgatcgacgcggcctgggaggtgaaggag
cggctggagagcctgggcctggccgccttctgcaagaccaccggcggcaagggcctgcac
gtggtcacgcccctcaaagccggcaaaggcgagatggactggccgacggccaaggcgttc
gcccgcgacgtctgcctggcgatcgccgccgacgcccccgaccgctacgtggtcaacatg
gccaaggccaagcgcaagggacggatcttcctcgactatctgcgcaacgaccggatgtcg
acggcggtggccccgctctcgccgcgcggacgtcccctggcgccggtgtccttcccgctg
acctgggaccaggtgaagacgggcctcgagccgaagcggtggacgatccgcaccgcgccc
gccctgctgaagaagaccaaggcctgggccgactactgcgacgccgagcgcccgctgaag
gacgccatccggaagctgaagtga
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