Qipengyuania aurantiaca: K3148_00360
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Entry
K3148_00360 CDS
T09825
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
qar
Qipengyuania aurantiaca
Pathway
qar03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
qar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
K3148_00360 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
qar03400
]
K3148_00360 (mfd)
Enzymes [BR:
qar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
K3148_00360 (mfd)
DNA repair and recombination proteins [BR:
qar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
K3148_00360 (mfd)
BRITE hierarchy
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
MFD_D3
SecA_DEAD
UB2H
RecG_dom3_C
AAA_30
AAA_16
Motif
Other DBs
NCBI-ProteinID:
QZD89906
LinkDB
All DBs
Position
70440..73931
Genome browser
AA seq
1163 aa
AA seq
DB search
MPDLSRILKAERPLTLAQVARGAQPLVMADLARAGTGRAVFIAPDDAAMRSVSEAAQFFA
PELDVIEFPAWDSLPYDRASPALTVSAKRLSALFRLQTGNAKAQLVVTTANAVLQRVLTP
FRIRESVREFKPGTEIGRDSLSLLLQKQGYSRTDTVIDKGEYAIRGSIVDVFPSGLDDAL
RLDFFGDELESLRSFDPNTQMSTGRLDSHLLLPASEALLDEDSIKRFRSRYREMFGANAT
QDPLYEAVSEGRRLAGMEHWLPLFEERLVTLFDHLDAKDAVVIDSASLAAADERIKDVTD
YYDQRKAASGQAKGSYRPLKPDALYLTDEEFNAALADAPAHRATGFDEPESETVIDFGFR
SGRDFAPERARGDSVYPVLADHLKALGKAGKRPLLAAYSTGSRARIASILSEAGAPVQLA
ESWQEALGLSAKGKPAAMVLPLEASFANDEMELLTEQDILGDRLVRRKKKRKDAEAFLAE
LQALSVGDLIVHTEHGIGKYLGLEPVSVGKSKHDCVQLEYKGGDKLFIPVENIDVLSRYG
SSEEAVMLDRLGGEAWQKRRARLKERIREIAGELMQVAAQRALKKAPVLEVDEPTYNQFL
DRFQYEETDDQDRAIADVLSDLESGKPMDRLVCGDVGFGKTEVALRAAFVAAMNGQQVAV
VAPTTLLARQHYENFRQRFSGFPLKVGRLSRLVPAKEMKETREGLAKGDVDIVVGTHAIL
SKQTKFKELGLVIVDEEQRFGVTHKEKLKQLRADVHMLTLTATPIPRTLQMAMTGLRELS
TIQTPPVDRLAVRTYVMEWDDMVMREALLREHHRGGQSFIVVPRISDMEAISDWLHENVP
EVKFVPAHGQMGAGEIEERMSAFYEGKYDVLLATTIVESGLDLPSANTIIIHRADIFGLA
QLYQLRGRVGRSKLRAYAYLTYEKDMALSEVAEKRLKVLGDLDSLGAGFQLASHDLDIRG
AGNLLGDEQSGHIREVGFELYQSMLEDAILAAKAGELGLEAKRETVSPQITVDAPIMIPE
DYVPDLAVRMALYRRLNDAENMGEIEALAAEMIDRFGPLPSATENLVRLIQIKLQAMEAN
IAKIDVGAAGTLVTFHNDDFADGPGLIAYVDKLKGTAKLRPDMKLVISRVWNSPESRLNG
LFQLTKGLSGIVRKAKKREKAVA
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
atgcccgacctctcccgtatcctgaaagccgagcgcccgcttactctggcgcaggtcgcc
cgcggcgcgcagccgcttgtcatggccgatctcgcgcgtgccggaaccggccgtgccgtc
ttcatcgcgcccgacgatgccgcgatgcgctcggtgagcgaggcggcgcagttcttcgca
cccgaactggacgtgatcgaattcccggcctgggattcgctgccctacgaccgcgccagc
cccgcgctgacggtcagcgccaagcgactttccgcgctgttccggctgcaaaccggcaac
gccaaggcgcagctggtcgtcaccaccgctaacgccgtgctccagcgcgtgctcaccccg
ttccgcattcgcgagagcgtgcgcgagttcaagccggggacagagatcgggcgcgacagt
ctctcgctcctgcttcaaaagcagggttacagccgcaccgacacggtgatcgacaagggc
gagtacgccatacgcggctccatcgttgacgtcttccccagcggcctcgacgacgcgctg
cggctcgatttcttcggggacgagctggaaagcctgcgcagtttcgatccgaatacgcag
atgagcacggggcgcctcgacagccacctcctgctgccggcaagcgaggcgctgctcgac
gaggacagcatcaagcgtttccgcagccggtatcgagaaatgtttggcgccaatgctacg
caggacccgctttacgaagccgtgagcgaaggccggcgccttgccggaatggaacactgg
ctgccgctgttcgaggaacggctggtgacgctgttcgaccatctcgatgcgaaggacgcg
gtggtcatcgacagcgccagcctcgccgcggcggatgagcgaatcaaggacgtcaccgac
tattacgaccagcgcaaggcggcgagcggtcaggccaagggcagctatcgtccgctgaag
cccgacgcgctctacctgacggacgaggagttcaacgctgcgctggccgatgcccccgcc
catcgcgccaccggtttcgacgaaccggaaagcgaaacggtcatcgattttggcttccgt
tcgggccgcgattttgcgcccgagcgcgcgcggggcgacagtgtctatccggtgctggcc
gatcacctgaaagcgctgggaaaggcgggcaagcgtccgctgctcgccgcctattcgacc
ggcagccgcgcgcgcatcgcctcgatcctgtccgaagcgggcgcgccggtgcagctggcg
gaaagctggcaggaggcgctgggcttaagcgccaagggcaagcctgcggccatggtcctg
ccgctggaagccagtttcgccaatgacgagatggaactgctcaccgagcaggacatcctc
ggcgatcgcctcgtgcggcgcaagaagaagcgcaaagatgccgaagccttcctcgccgaa
ttgcaggcgctgagcgtgggcgacctcatcgtccataccgagcacggtatcggaaaatat
ctcggcctcgagccggtcagcgtgggcaagtcgaagcacgattgcgtgcagctggaatac
aagggcggcgacaagctgttcatcccggtcgagaacatcgacgtgctcagccgctatggc
agcagcgaagaggcggtcatgctcgaccgactcggcggcgaagcctggcagaaacgccgc
gcacgcctgaaagagcgcatccgcgagattgcgggcgaactgatgcaggtcgctgcgcag
cgtgcgctcaagaaggcgccggtcctcgaagtcgacgagccgacctacaaccagttcctc
gaccgcttccaatacgaggaaaccgacgatcaggaccgcgccatcgccgatgtcctgtcc
gaccttgaaagcggcaagccgatggaccggctggtctgcggcgatgtcggtttcggaaag
accgaggtcgcgctgcgcgccgctttcgttgccgcgatgaacggccagcaggtcgcggtg
gttgcgcccaccaccctgctcgcgcgccagcattacgagaatttccgccagcggttctcc
ggctttccgctgaaggtcggccgcctctcgcgcctcgtccccgccaaggaaatgaaggag
acgcgcgaaggcctggccaagggcgatgtcgacatcgtcgtcggcacccacgcgatcctg
tccaagcagacgaagttcaaggaactcggcctcgtgatcgtcgacgaggagcagcgtttc
ggcgtcacgcataaggagaagctcaaacagctgcgtgccgacgtgcatatgctaacgctc
accgccacgccgatcccgcgcacgctgcaaatggcgatgacgggcctgcgcgaactctcc
accatccagaccccgccggtcgaccgcctcgcggtccgaacctacgtcatggagtgggac
gacatggtgatgcgcgaggcgctgctgcgcgaacaccatcgcggcgggcagagcttcatc
gtcgtgccgcgcatttcggacatggaagccatatccgactggctccacgagaacgtgccc
gaggtgaagttcgtccccgcgcatggacagatgggcgcgggcgaaattgaagagcggatg
agcgccttctacgagggcaaatacgatgtccttctcgccacgacgatcgtcgaaagcggg
ctcgacttgccgagcgcaaacaccatcatcatacaccgcgccgacattttcggcctcgcc
cagctgtatcagctgcgcggccgcgtgggtcgctcgaagctgcgcgcctatgcgtacctt
acctatgagaaagacatggcgctttccgaagtggccgagaaacgcctgaaggtcctcggc
gatctcgacagcctcggcgcaggcttccagctcgccagccacgatctcgacattcgcggc
gcaggcaatctgctgggcgacgaacagtcgggccacatccgcgaagtcggcttcgaactc
tatcagtcgatgctcgaagacgcgatcctcgccgccaaggcgggcgaactgggcctggaa
gccaagcgcgagacggtcagcccgcaaatcacggtcgacgcgccgatcatgatcccggaa
gactacgtccccgacctcgccgtgcgcatggcgctttatcgccgtctcaacgatgcggaa
aacatgggcgagatcgaggcgctggccgccgagatgattgaccgcttcggccccctgccc
tcggccaccgagaatctcgtgcgcctgatccagatcaagctgcaggcgatggaggccaat
attgccaagatcgacgtgggcgcggccggcacgctggtcaccttccacaatgacgatttc
gccgatgggccgggcctcatcgcctatgtcgacaagctcaaaggtactgccaagctgcgc
cccgacatgaagctggtcatcagccgcgtgtggaattcgccggaaagccgcctcaacggg
ctgttccagttgaccaagggactgtcggggatcgtgcggaaagcgaaaaagcgcgagaaa
gccgtggcctag
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