Qipengyuania citrea: NCF85_04825
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Entry
NCF85_04825 CDS
T08274
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
qci
Qipengyuania citrea
Pathway
qci03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
qci00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NCF85_04825 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
qci03400
]
NCF85_04825 (mfd)
Enzymes [BR:
qci01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NCF85_04825 (mfd)
DNA repair and recombination proteins [BR:
qci03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
NCF85_04825 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
SNF2-rel_dom
SecA_DEAD
UB2H
RecG_dom3_C
AAA_30
HEM4
DUF1439
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
USA62306
LinkDB
All DBs
Position
complement(1008838..1012329)
Genome browser
AA seq
1163 aa
AA seq
DB search
MPDLSRILKVDTPLTLAQVARGAQPLVMADLARASKGRAVFIAPDDSAMRSIVDAAAFFA
PELEVIEFPAWDSLPYDRASPALSISARRLSALFRLQAGKAKAQLVVTTANAVLQRVLSP
FRIRESVREFKPGMEIGRESLGLLLQKQGYGRTDTVIDKGEYAVRGSIVDIFPSGMDEAL
RLDFFGDELESLRTFDPNTQMSTGRLDSHLLLPASEALLDEDSIKRFRSRYREMFGANAT
QDPLYEAVSDGRRLAGMEHWLPLFEEKLATLFDHLGKDDLIVIDQASIAAADERVKDISD
YYDQRTAITGQAKGNYRPLKPDALYLTGEELKKALEAAPAHRTTPFDEPESDKVVGFGFR
SGRDFAPERARGDNVYPVLADHLKSLAKAGKRPLLAAYSKGSRSRIASILEEAGTPVQMA
ETWQEALGMAAKGKPAAMILPVEASFANDEMELLTEQDILGDRLVRRKKKRKDSDAFLAE
LQALSVGDLIVHTEHGIGKYLGLEPIAVGKSKHDCVQLEYKGGDKLFIPVENIDVLSRYG
SSEEAVMLDRLGGEAWQKRRARLKERINEIAGELMQVAAQRALRKAPVFEIDEGPFNQFL
DRFQYDETDDQERAIEDVLGDLESGKPMDRLVCGDVGFGKTEVALRAAFVAAMNGQQVAV
VAPTTLLARQHFENFAARFNGFPLKVGRLSRLVPARELKETREGLENGQVDIVVGTHAIL
SKQTKFKNLGLVIVDEEQRFGVTHKEKLKQLRADVHMLTLTATPIPRTLQMAMTGLRELS
TIQTPPVDRLAVRTYVMEWDDMVMREALLREHHRGGQSFIVVPRISDMEQISDWLHENVP
EIKFVSAHGQMSAGEIEERMSAFYEGKYEVLLATTIVESGLDLPSANTIIIHRADIFGLA
QLYQLRGRVGRSKLRAYAYLTYAQDTQLSEVAEKRLKVLGDLDSLGAGFQLASHDLDIRG
AGNLLGDEQSGHIREVGFELYQSMLEDAILAAKAGELGLEAKPERVSPQITVDAPIMIPE
DYVPDLAVRMALYRRLNDAADKAEIEALAAEMIDRFGELPSATANLVRLIEIKHQAIEAN
IAKVDVGAQGTLVTFHNDDFPDPMGLLGYVDRLKGTAKLRPDMKLVISRAWNSPESRLNG
LFQLTKGLSGIARKSRKSEKVAA
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
atgcccgacctttcccgtatcctgaaagtcgatacacccctcactctggcgcaggtcgca
cgcggtgctcagccgcttgtcatggccgatctcgcccgggccagtaagggccgtgcggta
ttcattgcgccggacgattcggcgatgcgctcgatcgtcgatgctgccgcgtttttcgcg
cccgagctcgaggtcatcgaatttcccgcctgggactcactgccgtacgaccgcgccagc
cccgcgctctcgattagcgccagaaggctgtcggcgctgtttcgcctgcaggccggcaag
gccaaggcgcagctcgtcgtcaccacagccaatgcagtattgcaacgcgtgctgagcccc
ttccgcattcgcgaaagtgtgcgagagttcaaacccggcatggagatcgggcgcgaaagc
ctggggctgctgctgcagaaacaggggtatggccgcaccgacacggtcatcgacaaaggc
gaatatgccgtgcgcgggtcgattgtcgatatcttccccagcggcatggacgaagcattg
cggctggacttcttcggcgatgaacttgaatcgctgcgcactttcgatcccaatacccag
atgagcaccggtcgactggattcgcacctgctgctccccgccagtgaagcgctcctcgac
gaggacagcatcaagcgtttccggagccgctaccgggaaatgttcggcgccaatgcgacg
caggatccactgtacgaagctgtcagcgatggtcgccgtctcgccgggatggagcactgg
ctgccgttgttcgaggagaagctggcgacgctgttcgatcatctgggcaaggacgatttg
atcgtcatcgatcaggcttcgatcgctgccgctgacgagcgggtcaaggacatctccgac
tattacgatcagcgcaccgcgatcacgggacaggcaaagggtaattaccgcccgctgaag
ccggacgcgctttatctgaccggcgaagaactgaagaaagcgctggaggcagcgcccgcg
caccggaccacgcctttcgacgaacccgaaagcgacaaggtggttggtttcgggttccgc
tccggccgcgactttgcaccggagcgcgcgcgaggggacaatgtctatcccgttctcgca
gatcatctgaaatcacttgccaaggctggcaaacgcccgctcctcgcagcctattccaag
ggaagccgctcacgcatagcgtccatcctcgaagaggctggcacgccggtccagatggcg
gaaacctggcaggaagcgctgggtatggcggcgaagggcaagcctgcggccatgatcctg
cctgtcgaagcaagtttcgccaatgacgagatggaactgctcaccgagcaggacatcctc
ggcgacaggcttgttcgccgcaaaaagaagcgcaaggattccgacgcgttcctcgccgag
ttgcaagcgctcagcgtgggcgatctgatcgttcataccgaacacggcatcggcaagtat
ctcggcctcgaaccgattgctgtcggcaaatccaaacacgattgcgtgcagctcgaatac
aagggcggcgacaagctcttcatcccggtcgaaaatatcgatgtgctgagccgctacggc
agcagcgaggaagcggtcatgctcgaccggctcggaggcgaagcgtggcagaagcgccgt
gcacgcctgaaagaacgcatcaacgagattgcgggcgagcttatgcaggtcgcggcgcaa
cgcgcgctcaggaaagccccggtcttcgaaatcgacgaaggtcccttcaatcagttcctt
gaccgtttccaatatgacgaaacggatgatcaagaacgcgccatcgaggacgttctgggc
gatttggaaagcggcaagccgatggaccggcttgtctgcggcgacgtcggcttcggcaag
accgaggtcgccttgcgagcggctttcgtggcagcaatgaatggtcagcaggtcgccgtg
gtggctcccaccaccctcctcgcccgtcagcacttcgagaatttcgcggcgcgcttcaac
ggtttcccgctcaaggtgggccgattgtcccgattggtgccggctcgcgaattgaaggaa
acgcgcgaggggctcgagaacggacaggtcgatatcgttgtcggaacgcatgcgatcctg
tcgaaacagacgaaattcaagaaccttggccttgtcatcgtcgatgaagagcagcgcttt
ggcgtcacgcacaaagagaaactcaagcagctccgtgcagatgtgcatatgctcacgctg
acggccactcccattccccgcacgttgcagatggccatgacgggcttgcgagagctttcc
accatccagaccccgcctgtcgatcggcttgccgtgcgcacttatgtgatggagtgggac
gacatggtgatgcgcgaagccttgcttcgcgaacatcatcgcggcgggcagagcttcatc
gtcgtcccgcgtatttccgacatggagcagatttccgactggcttcacgaaaacgtgcca
gagataaaattcgtctccgcccacggccagatgtcagccggcgaaatcgaggagcggatg
agcgcgttctatgaaggcaagtacgaagtcctgcttgccaccacgatcgtcgaaagcggg
ctggatctccccagcgccaacaccatcatcatccaccgggccgacattttcggactggcg
cagctctatcagctgcgagggcgtgtcggccggtccaagctgcgcgcttacgcctatctg
acttatgcgcaggacacgcagctttcggaagtcgctgaaaagcgcctgaaggttctcggc
gatctcgacagcttgggcgcaggctttcagcttgccagccatgatctcgacattcgcgga
gcgggcaatctgctgggtgacgaacagtccggccatatccgcgaagtcgggttcgaactg
taccagtcgatgttggaggatgcgatactcgcggccaaggcgggagaactggggctcgag
gcgaagcctgaacgtgtcagtccgcagatcacggtcgatgcaccgatcatgatcccggaa
gattacgtgcccgaccttgctgtgcgcatggcgctttaccgccgccttaacgatgccgcc
gacaaggccgagatagaggcactggccgcagaaatgatcgaccggttcggcgagttgcca
tccgccacggccaatctcgtccgactcatcgaaatcaagcatcaggccatcgaagcgaac
attgccaaggtcgatgtgggcgctcagggaacgctggtcactttccacaatgacgacttc
cccgatccgatgggcctgctcggctatgtcgatcgcctcaagggcacagcgaagctgcgg
cccgatatgaagcttgttatcagcagagcctggaattcaccggaaagcaggctcaacggt
ctcttccagctcaccaaggggttgtcgggcatcgcccgtaaatcgcgaaaaagcgagaag
gttgccgcctag
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integrated database retrieval system
