Quercus lobata (valley oak): 115952978
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Entry
115952978 CDS
T07350
Name
(RefSeq) DNA glycosylase/AP lyase ROS1-like isoform X1
Organism
qlo
Quercus lobata (valley oak)
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Gene cluster
GFIT
Motif
Pfam:
RRM_DME
Perm-CXXC
HhH-GPD
Motif
Other DBs
NCBI-GeneID:
115952978
NCBI-ProteinID:
XP_030926229
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All DBs
Position
7:complement(40596224..40607968)
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AA seq
1852 aa
AA seq
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MWLSQISGIDSLSGEMDVKEGQDGLQIEGSWIPKTPVKPILPRTTTIYTDSQGNPLDQAI
WLGSDTFSSNFTQASQASEIVACCNSSNCSQVHNCVNSSANKNIDSVGACCIEPLPRWNN
LRFADLLALADAASAAAGNVAPPPPPPPQGNDSVATNSFLSVTNCQNGNYAADHSSASLF
GNHDLQSKPWTNGHCMAEEPNYELCTPHRQSYDLNLPPRTMSDANSSKTNPQLAPITPEK
DMRVPKKSVSDVQHLCANERMDEETEKQNEVAATRVDTNEVQPNKELSTPVTDSSLAAVS
TPFKENDFPDKGSSQDIDLNKTPQQKPRRRKHRPKVITEGKPKRNRKPVTPKPAGSKENP
TGKRKYVRRKGIEKPSTTPPAEVIGEFTDLKTPKRARKSCRRALNFDVEGQAQDESSTCK
SYIDLDPDLPTQDFCSNEDESISTVQLSKGAVKHTEAGIAYDLARSMNQMLKDYISLPER
QAPSTTHPTKTDSSQAELNADSHKDNNTEGEGQLIAHDGKENTAKVILKTDNQISPKSPN
DSNCSTSAIFSKGEQARQSKRRHSHAAEQADASTTNLAGAQFNILDAYNMMNWMHFPNIH
KKKRTEKGQNSTTSSSSSCVTATKNVVRIAKCPLQDAEENPCSSKASQWVSGPQFDAGTV
SLTDGGKDLQNSHPSFECILALIQTERSTRKRSRGPTRARNLTSLTNFPECITHPTKQPL
VEGDGQTIEIPQNPHTCIEALVAEMSTTLARKKRTKKRNSVVGSASHQKLVLYNHNLPSF
NLSGASHEVTWKQMFSIDAIVEQFKHLNINRESSDFSLLQHNAVVPYSMQNQEHNALVLY
KRDGTVVPFEGWFDPIKKRRPRPKVDLDEETNRVWKLLLENINSQGIDGTDEEKAKWWEE
ERRVFRGRADSFIARMHLVQGDRRFSQWKGSVLDSVVGVFLTQNVSDHLSSSAFMSLAAH
FPLKSTSNQKSCYEEGLSFVVDEPELYILDPEDSIQWKPVCDQSSMTLHDPEHNEEKEVV
NSNESPGGSTVAETACYTGGGRLAKTYSVSSQDSAFSSQNSPPVLTAENIGSGLERNSEA
DYLLNGSKPNSSDGLASIVELQQMAGSTLLDEFYSHVSGSAPSDENPMDACNESKGMNHD
NQRQDIDKINDPQSSLGASMSLSSNYHLHLTSTSRVPEVECSEMFKEETQSSDISQNKDE
NSVSEQSAITVESSSQDTVQNKPTMNVPKAPRSSSKSGNSVQVYENVIIPSQSQVLGDPK
IVESLAQGQNIEVQQSLPSLSGETQDVTAISEMNAATIKAKRRRAAKEKKENVNWDNLRK
QVEANEIKRERTANTMDSLDWEAVRCADVNEIASTIKERGMNNMLAERIKDFLNRLVREH
GSTDLEWLRDVPPDQAKEYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWV
PLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPN
CNACPMRGECRHFASAFASARLALPGPEEKSIVTATENRPAENPTLNIDRLALPLPQECR
QLEAKTGVSNCEPIIEEPATPEPECTQAENDIEDTINEDPNEIPIIKLNIEEFSQNLQNY
MQNNMELQEGDVSKALVALTPEAASIPTPKLKNVSRLRTEHQVYELPDSHPLLNGLDKRE
PDDPCSYLLAIWTPGETANSIQPPEKSCSSQEYGRLCDKKECFSCNSIREANSQMVRGTI
LIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLNPIDVPRNWIWNLRRRTVYFGTSIPTIF
KGLTTQEIQQCFWKGFVCVRGFDQKSRAPRPLMARLHFPASKLTKTKGKTDD
NT seq
5559 nt
NT seq
+upstream
nt +downstream
nt
atgtggttgagccagatctccggcattgactcactctcaggagaaatggatgttaaagaa
ggccaagatgggttacaaattgagggttcttggattccaaagacccctgttaaacccatt
ctgccaagaacaaccacgatctacacagactcacagggaaacccgcttgaccaagcaatt
tggttgggatcagacacattttcttctaattttactcaagcctctcaagctagtgaaata
gttgcatgttgcaattcctcaaattgcagccaagtacacaactgtgtcaacagttcagct
aataaaaatattgacagtgtgggagcttgctgcatagagcccttacccagatggaataat
ctccggttcgccgatctcctggccctcgcagatgcagcctccgcggcggccggtaatgta
gcaccaccaccaccaccaccaccacagggtaatgacagtgttgcaacaaattctttcttg
tctgtcacaaattgtcagaatggaaattatgcggcagatcacagctctgcaagcctgttt
ggaaaccatgacctccaatcaaaaccgtggacaaatggccactgcatggcggaagaacct
aactatgaactttgtacccctcatcggcagtcctatgatcttaatttgccaccaaggaca
atgtctgatgcaaactctagcaagaccaatccccagttggcacccataacaccagagaag
gacatgagagtaccaaagaaatcagtttcagatgttcaacatttatgtgcaaacgaaaga
atggatgaggaaacagagaagcagaatgaagttgctgccacaagagttgacaccaatgag
gtccaacccaataaagaactctcaacccctgttacagattcatcacttgctgctgtttcc
actccattcaaggagaatgacttccctgacaagggaagcagccaagatattgacctgaat
aaaacaccgcagcagaaaccaaggcggagaaaacaccggcccaaggtgatcacggaagga
aaaccaaaaagaaatcgcaagccagtgactccaaaacctgccggttccaaggaaaatcca
acagggaagaggaagtatgtacgaaggaaaggaattgaaaagccctctacgactcctcca
gcagaagtaattggagaatttactgatctgaaaacacccaaacgtgctagaaagtcatgc
aggagggctttaaattttgatgtagaaggacaagcgcaagatgaaagctctacatgcaaa
tcttatattgatttagatccagatttaccaacccaagatttttgcagtaatgaggatgaa
tcgatatcaacagtacagctcagcaaaggggccgtaaaacacacagaagctggcattgcc
tatgacctcgcccgctccatgaatcagatgctaaaagattacatatcattgcctgaaagg
caagccccaagcacaacgcatcctacaaagactgattcctcacaggcagaactgaatgct
gattcccataaggataacaatacagaaggggaaggtcaactgattgctcatgatggaaag
gaaaacactgcaaaagtcatcctaaaaactgacaatcaaatatcaccaaaaagtccaaat
gattccaactgcagcaccagtgcaattttttcaaaaggagaacaagcaaggcaatcgaag
agaaggcattctcatgctgctgaacaagctgatgccagcacaacaaacctagccggggct
cagtttaatattttagacgcatacaatatgatgaattggatgcattttccaaatattcac
aagaaaaagagaactgaaaagggacagaattctaccacctctagttcatcatcttgtgtt
actgccactaaaaatgttgtgagaatagcgaaatgtcccctacaagatgctgaagaaaat
ccttgttcatcaaaagccagccagtgggtttctggtccccagtttgatgctggtacagtt
tccctgacagatggaggaaaagatcttcagaatagtcatccaagttttgaatgtattcta
gctttaattcagacagagaggtcaacaagaaagagatctagaggccctactcgcgctcgt
aacttgacttccctgaccaattttccagagtgcataactcaccccaccaaacaacctcta
gtggaaggtgatgggcaaacaattgagattccacaaaatcctcatacatgcatagaggcc
ctggttgcagagatgagcacaacattggcaagaaagaagcgaaccaagaaaagaaactct
gttgtcggttcagcttcacaccagaaattagtcttgtataatcacaacctaccctctttc
aatttatcaggtgcttctcatgaagtaacatggaagcagatgttttctattgatgcaata
gtcgagcaatttaagcatctaaacatcaatagggaaagtagtgatttttcactactacag
cataatgcagttgtcccctacagcatgcaaaatcaagagcacaatgcactcgtcctttat
aaaagagatggtacagttgtaccctttgaaggttggtttgatcctatcaagaaacgacgt
ccacggcctaaagttgaccttgatgaagagactaatagagtgtggaaacttttgttggag
aatataaacagtcaaggtattgatggaactgatgaagagaaggcaaaatggtgggaagaa
gaacgaagagtattccgtggacgtgcagattcttttattgcacgcatgcatcttgtacaa
ggagatagacgcttctcacaatggaaaggatcagtcttggactcagttgttggagttttt
ctcactcagaatgtctctgaccatctttctagttctgcatttatgtcacttgctgcacac
ttccccctcaagtcaaccagcaaccaaaaatcatgctatgaagaagggttgagctttgta
gtcgatgaaccagaactgtacatactggatccagaagacagcatacaatggaaaccagtt
tgtgaccagagttccatgacactacatgaccctgaacataatgaagaaaaagaggtagtt
aacagcaacgaatcccctggaggcagtacagtggcagaaacagcatgttatacaggagga
ggtaggctagcaaaaacctattcagtttcatctcaagattcagccttttcatctcaaaac
tctccacctgttctaactgctgaaaacataggatcaggcctagagaggaactcagaagca
gactatctattaaatgggtctaagcccaacagctcagatggcttggcttctattgtggag
cttcaacagatggctggatctacactgctagatgaattttacagtcatgtaagtggcagt
gcaccttctgatgagaacccaatggatgcatgcaatgaatctaaaggtatgaatcatgac
aaccaaagacaagatatagacaagataaatgatcctcaaagctccctaggagcatccatg
agcctttccagtaattatcatttgcatctgacctccacttcaagagtgccagaagttgag
tgctctgagatgttcaaagaagaaacccaatcttctgacatttcccagaacaaagatgaa
aatagtgtgagtgaacaaagtgcaataacagttgaatcttcaagtcaagatactgttcaa
aataagcctacaatgaatgttccaaaagctcctagatcttcaagcaaatcaggcaacagc
gttcaagtatatgaaaatgtgatcattccatctcaaagccaggtacttggggaccctaaa
attgttgaatcactagctcaggggcaaaacattgaagtgcaacaaagcttgccaagtctt
tctggagaaacccaagatgttacagcaatcagtgagatgaatgctgctactataaaagca
aagagaagaagagctgcaaaggagaaaaaagaaaatgttaactgggataatcttaggaaa
caggtggaagccaatgaaattaaaagagaaagaacagcaaacacaatggactcactggac
tgggaagctgtaagatgtgcagatgttaatgagatcgccagcaccatcaaagaacggggg
atgaacaacatgcttgcagagcgtatcaaggatttccttaaccgactggttagagaacat
gggagtactgatttagaatggttgagagatgttccacctgaccaagcaaaagaatatctg
ctaagcataaggggattggggttgaaaagtgtagagtgcgtacggcttttgacactccac
catcttgcttttccagtggacacaaatgttggacgaatagctgtaagattgggatgggtg
ccccttcagccactgcctgagtcacttcagttgcatcttctagaactgtacccagtcttg
gaatccattcaaaaatatctctggccccgattatgcaagctcgaccaaagaacattgtat
gaacttcattaccagatgattacatttggaaaggtattttgtacaaaaagcaagccaaat
tgcaatgcttgcccaatgagaggagagtgtcgacactttgctagtgcatttgcaagtgca
aggcttgccctgcctgggccagaggagaaaagtatagtgactgcaactgaaaacagacca
gctgaaaaccctactttgaacatcgatcgactggccctgcctctccctcaggagtgcaga
caattagaagcaaaaactggagttagtaactgtgaacctattattgaagagccagcaaca
ccagagccagaatgcactcaagcagaaaatgacattgaggacactataaatgaggaccct
aatgaaattcctataatcaaacttaacattgaggagttctctcagaacttacagaattat
atgcaaaacaacatggaacttcaagaaggtgacgtgtcaaaggccttggtcgctttaact
ccagaagctgcatcaattccaacccccaagcttaaaaatgtgtctcgactacgaacagag
caccaagtctatgaacttccagattcacaccctcttctgaatgggctagataaacgagaa
cctgatgatccctgctcataccttcttgctatatggacaccaggtgagacagcaaattcc
atccaaccacctgaaaaaagttgcagctcccaagaatatggcagattgtgtgacaagaag
gaatgtttctcatgcaacagcatacgtgaagcaaattcccagatggtccgaggaacaatt
ttgataccatgtcgaacagcaatgaggggaagctttccactcaatggcacctactttcaa
gttaacgaggtatttgctgaccacgattcaagtctcaacccaattgatgttcctagaaat
tggatatggaacctgcgaaggcgaactgtgtactttggaacctccataccaacaatattt
aaaggtttaacaacacaagaaattcaacaatgcttttggaaaggatttgtttgtgtgagg
ggatttgaccagaaatcaagggcacctcgccctctaatggcaagactgcacttcccggct
agcaagttgaccaagacaaagggtaagacggatgattag
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integrated database retrieval system
