Quercus lobata (valley oak): 115953380
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Entry
115953380 CDS
T07350
Name
(RefSeq) THO complex subunit 1-like isoform X1
KO
K12878
THO complex subunit 1
Organism
qlo
Quercus lobata (valley oak)
Pathway
qlo03013
Nucleocytoplasmic transport
qlo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115953380
09122 Translation
03013 Nucleocytoplasmic transport
115953380
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
qlo03019
]
115953380
03041 Spliceosome [BR:
qlo03041
]
115953380
Messenger RNA biogenesis [BR:
qlo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
115953380
Spliceosome [BR:
qlo03041
]
Complex C
Other components
EJC/TREX
115953380
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
115953380
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
efThoc1
Motif
Other DBs
NCBI-GeneID:
115953380
NCBI-ProteinID:
XP_030926868
LinkDB
All DBs
Position
7:complement(29271890..29286762)
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AA seq
665 aa
AA seq
DB search
MSNALLSLCLSAIPSVDSRLEHSLLSTINMEVFKRAILQPGPPQAFALQTVQEVIKPQKQ
TKLAQDENQLLENILRTLLQELVSSAVQSGEQIMQYGQLIDDGETSQGHIPRLLDIVLYL
CEREHVEGGMIFQLLEDLTEMSTMRNCKDIFGYIESKQDILGKQELFARGKLVMLRTCNQ
LLRRLSKANDVVFCGRILMFLAHFFPLSERSAVNIKGVFNTSNETKYEKDPPDGISIDFN
FYKTFWSLQEHFCNPASLTLASAKWQKFTSSLMIVLNTFEAQPLSDEEGDANNLEEESAN
FSIKYLTSSKLMGLELKDPSFRRHVLVQCLILFDYLKAPGKNEKDLPSESMEKKFYRLCT
STSCFLYYSPVYTSELYIKKEEIKSCEERVKKLLEMTPPKGKDFLRKIDHVLEREKNWVW
WKRDGCPPFEKQPLEKKTVQDGSKKRRQKWRLGNRELSQLWKWADQNPNALTDPQRVRTP
HIMEYWKPLAEDMDASAGIEAEYHHKNSRVYCWKGLRFSARQDLDGFSRFTDHGIEGVVP
LELLPPDVRSKYQAKPNDKSKRAKKDESKGAAAQSEENQIATPASEVDGEGIRADLEASA
AQMDVDATATGNISQGGTPTPDEHQKQSSDTDNGQEAGQLEADAEVEAGMIDGETDAEVD
LDAVG
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atgagtaatgctcttctttctctctgcctctctgctattccttctgtcgattccagattg
gagcattcattgctttcaacaatcaacatggaagtgttcaagagagccatactacagcct
gggccacctcaagcctttgcactacagactgttcaggaagttataaaacctcagaaacaa
acaaaactagcccaagatgagaatcaattattagaaaacattcttcggacgttgctccag
gaactagtgtcatctgcagtacagtcaggggagcaaataatgcagtatgggcaattgatt
gatgatggtgaaactagccagggtcatattcctcgtcttcttgacattgtgctatatctt
tgtgagagagaacatgttgaaggtggcatgatatttcaactgttggaagacttgacagaa
atgtctacaatgagaaactgcaaggatatttttggttatatagagagtaaacaagatatt
ttagggaagcaagagctttttgcgcgtgggaaacttgtgatgttaagaacatgcaatcaa
cttcttcgtcgtctatcaaaggcaaatgatgtggtgttttgtggacgaattctcatgttt
ctggcacatttttttcctttgtctgaacgctcagctgtgaatattaaaggagtttttaac
acatcaaatgaaacaaagtatgagaaagacccccctgatgggatttctattgattttaac
ttttataagaccttttggagtttacaggaacacttttgcaaccctgcttctctaactctt
gcttctgctaagtggcagaaatttacatccagtttaatgattgttttgaatacctttgaa
gctcaaccattaagtgatgaagagggggatgctaataatttggaggaagagtcagcaaat
ttcagcataaaatatcttactagcagtaaactaatgggtttagagttgaaggatccaagt
tttcgacgccacgttcttgtgcagtgccttatattatttgattatttgaaggccccagga
aagaacgagaaagatttgccatctgaaagcatggaaaagaagttttatcgtttgtgtaca
tcaacatcatgctttttatactattctcctgtatatacttcagaattgtatatcaagaaa
gaagaaataaaatcatgtgaggagcgtgtgaaaaaattgcttgaaatgactccacctaaa
gggaaagattttcttcgtaaaattgatcatgtcttagaacgtgagaaaaattgggtgtgg
tggaaacgtgatggttgcccaccatttgaaaagcaaccattggagaagaaaacagtacaa
gatggatctaaaaagcgtagacaaaagtggagactgggaaatagagaactctctcagttg
tggaagtgggcagatcagaatccgaatgctttgactgatcctcaacgtgtccgaactcct
cacatcatggaatactggaaacccttggctgaagatatggatgcatcagctggaatagaa
gctgaatatcaccacaaaaatagtcgggtttattgttggaaaggtcttcgattttcagct
cgacaggacttggatggattttctagattcactgatcatggtattgaaggggttgtgcct
ctagaacttttgccgcctgatgttcgatccaaataccaagcaaaaccaaatgacaagtcc
aagcgtgctaagaaggatgaatccaagggtgctgcagcacaatctgaggaaaatcagatt
gctacacctgcaagtgaagttgatggtgaaggaatcagagctgatcttgaagcctcagca
gcacaaatggacgttgatgcgacagcaactggcaatatatcccaaggtggcactccaaca
ccagatgaacatcaaaagcagagctctgacactgataatggtcaagaggcgggtcagtta
gaagctgatgctgaggttgaggcaggaatgatagatggagagactgatgcagaagttgat
ttagacgctgttggctga
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integrated database retrieval system
