Quercus lobata (valley oak): 115975711
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Entry
115975711 CDS
T07350
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
qlo
Quercus lobata (valley oak)
Pathway
qlo03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
115975711
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
qlo03400
]
115975711
Enzymes [BR:
qlo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
115975711
DNA repair and recombination proteins [BR:
qlo03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
115975711
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
BRCT
PTCB-BRCT
DNA_ligase_A_C
RNA_ligase
DNA_ligase_IV
Motif
Other DBs
NCBI-GeneID:
115975711
NCBI-ProteinID:
XP_030952468
LinkDB
All DBs
Position
2:complement(46730109..46784079)
Genome browser
AA seq
1159 aa
AA seq
DB search
MTEQTKFSVVCSLFTWMQRSKSLAKKRSKFRKFLDTFCNPRDYFTAIRLVLPNLDRERGT
YGLKESVLATCLIDALGMSRDSQDALRLLNWRKGGAQTGANAGNFPLVAAEVLQSRQGMA
SGGLTIKDVNDLLDRLSSSENRAEKTSVLSTLINKTNAQEMKWIIMIILKDLKLGISEKS
VFHEFHPDAEDLFNVTCDLKLVCEKLRDRTQRHNRQDIEIGKAVRPQLAMRVTDATAAWK
KLHGKEVVVECKFDGDRIQIHKNGTEIHFFSRNFLDHSEYGHGMSDIIIQNVLVDRCILD
GEMLVWDTSLNRFAEFGSNQEIAKAVKDGLDSDRQLCYVAFDILYVGDTSVIHQSLKERH
ELLQKVVKPLKGRLEILVPNGGLDLNTHCLSGEPCWSLIAHNVDDVERFFKETIENRDEG
IVLKDLGSKWEPSDRTGKWLKLKPEYIRAGSDLDVLIIGGYYGSGRRGGEVAQFLVGIAE
LPAPNTYPRRFLSFSRVGTGLSDEELDAVVTKLKPYFRKYEYPRQQPPSFYQVTNNSKER
PDVWIDSPEKSIILSITSDIRTIRSEVFAAPYSLRFPRIDRVRYEKPWHECLDVQSFVEL
VHSSNGTTQRGMDYGGLQESKPKRMKTSKKGNVSIVPSHLSQTDVSDIKGGSSIFLNMMF
YFVNVPPTHSLDSFHKMVAENGGTFSMNLNNSVTHCVAADSKGIKYQAAKRHGDIINYSW
ILDCCSQKKLLHLQPKHFLFRSNSSKKLQEEIDEFSDSYYQDLDLADIKQLLSNVNRYED
TKTVDCYKKKYCPKEKWSRFHGCCVYLHPPVPSLKPDWEVLMGLALKRLKLEVSIAGGKV
SDSLVLATHLVVLSVPGFEVDFETVLNSFTSSEKNLLMNKRLHVVKYQWLEDCMERDKRL
QEETYSLKTIEVEDSSTAECKHDVDLGAISGLDNLDNQNISSSLDVREQRREKTAPEIPK
ILVSHEEVGKRKRGRPAGGTSNRKGKTTVAQARRTRACTGKKPAKICDNESDESGSHNEK
TCREEIKSREGNHKMSCKESSEIQETKMVQDSESSYRGKAAEEEVEKDVRYEEYNIVPNI
ELIETHRSQDTERPEKFEVMIDPVQAMLLDMIPSLGVKKIETTDTILEDEKPLLDPNAEP
TKKKKVSYKDVAGELLKDW
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
atgacggagcaaacgaagttcagcgtagtgtgcagtctattcacttggatgcagcggagt
aagtcgttggcgaagaagcgctccaagttccgcaaattcctggacaccttctgcaatccc
cgcgattacttcacagcaatccgcctcgtgctccccaacctggaccgcgagcgcggtacc
tatggcctcaaggagtccgttctcgccacctgtctcatcgacgccctcggcatgtctcgc
gactctcaggacgccctccgccttctcaattggcgcaaaggaggcgcccaaactggtgcc
aatgccggcaattttcctctcgttgctgcggaggttttgcagagtagacaaggaatggcg
tccggtggactaacaattaaggatgtcaatgacttgctcgatcgtttgtcttccagtgaa
aacagggccgagaagacatcagttctttctactctgataaacaaaacaaatgcacaggaa
atgaagtggattattatgattattcttaaagatctaaagctggggattagtgaaaaaagc
gtttttcatgaattccatcctgatgctgaagacttgtttaatgttacctgtgacttaaaa
ttggtttgtgaaaagctgagggatagaactcaacggcataatcgacaggacattgaaatt
ggaaaagctgtgcgccctcaactagctatgagagttaccgatgctacggctgcatggaaa
aagctccatgggaaagaagtggttgttgagtgcaaatttgatggtgatcgcatccaaatt
cataagaatggaactgagatacatttcttctcaaggaactttcttgatcactctgaatat
ggacatgggatgtcagacattatcatacaaaatgttttggttgatagatgtatactggat
ggtgaaatgttagtctgggatacatctttgaatcgttttgctgagtttggctcaaatcag
gaaatagccaaggcagtgaaggatggactggacagtgatcgacagttgtgctatgttgcg
tttgatattctttatgttggggataccagcgtaattcaccaaagcttgaaagaacggcat
gagcttctacagaaagttgtgaagcctttgaagggtcgtttggagatcttagtacctaat
ggtggtcttgatcttaatactcactgcctttctggggagccttgttggtcacttattgct
cataatgtggatgatgttgagaggttcttcaaagaaaccattgagaacagagatgaaggg
attgttttaaaggaccttggttccaaatgggaacctagtgatcggactggaaagtggttg
aaattgaagcctgagtacattcgtgctggttctgatctggatgttctaatcataggagga
tactatggatctggacgccgtggtggggaggtagctcaattcttggtgggcattgcagag
cttccagcccctaatacctatcctagacgatttctttctttctccagagtgggcactgga
ctttctgatgaagagctagatgctgttgtaactaaattgaagccttattttaggaaatat
gagtacccacggcagcaaccaccaagtttttatcaagtaacgaataactcaaaagaaaga
ccggatgtttggattgacagcccggagaaatcaataattctttcaattaccagtgatatc
cgaacaataaggtctgaggtatttgccgctccttatagcctgagatttccgcgtattgac
cgagtgagatatgaaaagccttggcatgaatgcttggatgtgcaatcttttgtagaacta
gtacattcaagcaatggtactacacaaagggggatggattatggtggccttcaggaaagt
aagccaaaacgaatgaaaacctctaagaagggaaatgtctccattgttccttctcattta
agccagactgacgtttctgacattaagggaggctcgtcaatattcttgaatatgatgttt
tacttcgttaatgtcccaccaacccattctcttgattcattccacaaaatggttgctgag
aatggagggactttctcaatgaatttgaacaactcagttacccattgtgttgcagctgat
agcaaggggattaagtatcaggcggcgaaacgtcatggagatattattaattactcttgg
atattggattgttgctcacagaagaagctccttcatttacagccaaagcacttcctcttc
cgttccaattcatcaaagaagttacaagaagaaattgatgaattttctgactcttactac
caggatcttgatcttgcagacatcaaacagctcttaagtaatgtgaacagatatgaagat
acaaaaactgtcgactgttataagaagaagtactgtccaaaggagaaatggtctcgtttt
catggctgctgtgtttaccttcaccctccagtaccatctttgaaaccggattgggaagtt
ctgatggggcttgcattgaagaggttgaagcttgaggtttccattgctggtggaaaagtc
agtgacagtcttgtccttgctacccatttggtagtcttgtcagtaccaggtttcgaagtg
gacttcgaaactgtattaaatagcttcacttcatcagagaagaatcttttaatgaacaag
aggttgcatgttgtgaaatatcaatggttagaagactgcatggagagggacaaaagattg
caagaagaaacatatagcttgaagaccattgaggtggaagattcaagcactgcagagtgc
aaacacgatgtggatctaggagccatttctggattggacaatttagacaatcagaatata
tcctcttctcttgatgtaagggaacagagaagggagaaaactgctccagaaattcctaaa
attttggtctcacatgaggaggttgggaaaaggaaaagaggaagacctgctggtggtaca
agcaatagaaaaggaaaaacaactgtggcacaagctcgaagaacacgagcatgtactgga
aagaagcctgcaaaaatttgtgataatgaatcagatgaaagcgggtctcacaacgagaag
acttgcagggaagaaatcaaaagtagagaaggaaatcacaaaatgtcatgtaaggaaagt
tcagaaatccaagagactaaaatggtacaagattctgaatcatcatatagaggcaaggca
gctgaggaagaagttgaaaaagatgttagatatgaagagtacaatatagttcctaatatt
gagctgattgaaacgcatagaagccaagacactgagaggcctgaaaaattcgaagttatg
attgatcctgttcaagccatgttgttggacatgattccgagccttggagtgaagaaaatt
gagactacagatacaattcttgaagatgagaaaccgctcttggatcccaatgcagagcct
acaaagaaaaagaaagtcagctacaaggacgttgctggtgagctcctgaaggattggtaa
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integrated database retrieval system
