Quercus lobata (valley oak): 115977574
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Entry
115977574 CDS
T07350
Name
(RefSeq) regulator of nonsense transcripts UPF3-like isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
qlo
Quercus lobata (valley oak)
Pathway
qlo03013
Nucleocytoplasmic transport
qlo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
115977574
03015 mRNA surveillance pathway
115977574
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
qlo03019
]
115977574
Messenger RNA biogenesis [BR:
qlo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
115977574
mRNA cycle factors
P-body specific factors
115977574
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_2
Motif
Other DBs
NCBI-GeneID:
115977574
NCBI-ProteinID:
XP_030955358
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Position
2:complement(100922537..100936302)
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AA seq
528 aa
AA seq
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MKDSLDRTKVVLRHLPPAISQAALTDQIDSAFAGRYHWLTFRPGKASLKHQSYSRAYIDF
KKPEDVIEFAEFFDGHLFVNEKGTQFKTIVEYAPSQRVPKQWVKKDGREGSILKDPEYLE
FLEFLAKPVENLPSAEIQLERRDAERAGSAKDAPIVTPLMEFIRQKRAAKGGSRRSLSNG
KLSRRASGSSSGSPSSASSKRGSERRRISTRMYVLRDAAKNMSVKDKSTYILVPKRDDQQ
LSDKSVTLVPAAGNELLEEENGVSGTNESGKKKVLLLKGKEREISSVSGSILQQQGVSSP
VRNIIGSGPLKHNQQREGSGRIIRSILINKDSRQSQSFVGQSEQQIQTSNSEKDKRPPRI
PHAQLASKDTNSTPENKVVANDFPGFYSEKQEKRSRNKDKPDRGVWAPLRRSDGTHASEE
SLSSGTSQLLLDSSEGSHGDMKFEMANARIGEVKNLGSGRSSHSSLDNGSHKHFGRRGPT
HGVKDVDGSSNVSEGKHLRRGTGFNSHERFFAMNLQKQVWVQKPSSGS
NT seq
1587 nt
NT seq
+upstream
nt +downstream
nt
atgaaggactcgctggatcggaccaaggtggtgctccgtcacttgccgccggcgatttct
caggccgctctcaccgaccaaatcgactccgccttcgccggtcgctaccactggctcact
ttccgacctggcaaagcaagcctgaagcatcaatcctattctagagcctacattgacttc
aagaaacctgaggatgttattgagttcgctgagttcttcgatgggcatttgtttgttaat
gagaagggcactcagtttaaaactattgttgagtatgctccatctcaacgcgttccaaag
cagtgggttaaaaaagatggtcgtgaaggaagcatattgaaagatcccgagtatctggaa
tttcttgaatttcttgcgaagcctgtcgaaaatcttcccagtgcagagatacaattggag
agaagagacgcagaacgagctggatctgcaaaggatgctcccattgttacaccattaatg
gaatttatacgtcagaaaagagctgctaagggtggttctcggagatcattgtctaatggg
aaattgagcagaagagcttctggatcatcatctggaagccctagttcagcctcatcgaaa
cgaggttctgagaggagacggatttccaccaggatgtatgttttaagggatgctgcaaag
aatatgagtgtcaaagacaagtcaacctacattctggttccaaagcgagatgatcagcag
ctttctgacaagtctgttacattggttcctgcagctgggaatgaattattggaagaggaa
aatggagtatccggaactaatgaatctgggaaaaagaaagtcctgctcctgaaaggaaaa
gagagggagatttcttctgtgtctggcagcatattacagcagcagggtgtatcatctcct
gttagaaatataattggttctggtccactcaagcataaccagcaacgtgaaggtagtgga
aggataatcagaagcatacttataaacaaggattcacgtcaaagtcagtcttttgtgggc
cagtcagagcagcaaatccagacttcaaattcagagaaggacaagcggcctcctcggatc
ccacatgcacaattggcttcgaaggacacaaattcaactccagaaaataaggttgttgcg
aatgactttcctggattttatagtgagaagcaagaaaaacgttcaagaaataaggataag
cctgatcgtggtgtatgggctcctcttcgtcgttcagatggaactcatgctagtgaagag
tctttgtcatccggtacttcacagttgctgctagattcttcagaaggatctcatggagat
atgaaatttgaaatggcaaatgctcggattggggaagttaaaaaccttggaagtggacgt
agtagccattcttccttagataatggatcccataaacattttggtcgccgtgggccaacg
catggtgtcaaggatgttgatggctcatcaaatgtaagtgaggggaagcatttgaggaga
ggcactggctttaattcccatgagaggttttttgcaatgaatttgcagaaacaagtgtgg
gttcagaaaccaagttctggttcctaa
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