KEGG   Quercus lobata (valley oak): 115980519
Entry
115980519         CDS       T07350                                 
Name
(RefSeq) DNA ligase 1 isoform X1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
qlo  Quercus lobata (valley oak)
Pathway
qlo03030  DNA replication
qlo03410  Base excision repair
qlo03420  Nucleotide excision repair
qlo03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:qlo00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    115980519
   03410 Base excision repair
    115980519
   03420 Nucleotide excision repair
    115980519
   03430 Mismatch repair
    115980519
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:qlo03032]
    115980519
   03400 DNA repair and recombination proteins [BR:qlo03400]
    115980519
Enzymes [BR:qlo01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     115980519
    6.5.1.6  DNA ligase (ATP or NAD+)
     115980519
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     115980519
DNA replication proteins [BR:qlo03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    115980519
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     115980519
DNA repair and recombination proteins [BR:qlo03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     115980519
   NER (nucleotide excision repair)
    Other NER factors
     115980519
   MMR (mismatch excision repair)
    Other MMR factors
     115980519
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Other DBs
NCBI-GeneID: 115980519
NCBI-ProteinID: XP_030958616
LinkDB
Position
1:15236860..15249751
AA seq 792 aa
MLLLPPPFTLTLTVSLSLSRSRSALKTLSSFLVSTKPFSSKNPNLTMSKPPSAFDALMSN
ARAAASKKKPQSSSPNKRKTLDSNPPQNPKTAKIPNSSPPGNAVSDAKPEESSGTKQVKE
NGNCAQDPKLSGSEKKTKVISVEERVAQLKSKMPELKKKAGDFDPRSVASWGKGERVPFM
FLCLVFDMISNESGRILITDIVCNMLRTVMVTTPDDLVPIVYLSANRIAPAHEGLELGIG
DASIIKALAEAFGRTEVQVKKQYQVLGDLGLVAKASRSSQSMMRKPDALTVTKVFNTFQL
IAKESGKDSQEKKKNHIKGLLVAATDCEPQYLIRLLQAKLRIGLAEQTLLAALGQAAVYT
QKDSTPPPNIQSPLEEAVKIVKQAYSLLPVYDKIVPALLSGGVWNLPKTCNFTPGVPVGP
MLAKPTKTVQEIVRKFQDSEFTCEYKYDGERAQIHYMDNGSVEIYSRNAERNTGKFPDVV
IAVSRLKKSSVRSFVLDCELVAYNREKQIILPFQTLSTRARKNVDVSDIKVDVCIFAFDM
LYLNGQPLLQEELKVRREHLYGSFEEEAGFFQFATAITSNDLDEIQKFQDSAVNASCEGL
IIKTLTKDATYEPAKRSLNWLKLKKDYMDNLGDSLDLVPIAAFYGRGKRTGFYGAFLLAC
YDSNNEEFQSICKIGTGFSEEVLEKCSTNLTSKVIPEPKSYYRYADSMNPDVWFEPAEVW
EVKAADLTISPVHRAAVGIVDPDKGISLRFPRLMRVREDKKPEEATSSEQVAEMYNSQKH
NHPNDQDDDEDD
NT seq 2379 nt   +upstreamnt  +downstreamnt
atgctactactaccaccacccttcactctcactctcacagtctcactctcactctctcgc
tctcgctcagctctcaaaacactctcttcctttctcgtctccacaaaacccttctcttcc
aaaaaccctaacctcacaatgtcgaagcccccttccgctttcgacgcactcatgtccaac
gcacgcgccgccgcctccaagaaaaagccccaatcttcttctcccaacaagcgcaaaacc
ctagattccaaccctccccaaaaccccaaaaccgccaaaatccccaattcttcgccgccc
ggtaacgccgtttccgacgcgaaacccgaagaatctagcgggaccaagcaggtgaaagag
aatggaaactgtgctcaagatcctaaattgtctgggtcggagaagaagacgaaggtgatc
agcgtggaggagagggttgcgcagttgaagagcaaaatgccggaactgaagaagaaagct
ggggatttcgatccgagatcggtggcgagttggggcaagggcgagcgtgttccgttcatg
tttctttgtttggttttcgacatgatttcgaacgagtcggggcggattttgatcacggat
attgtgtgcaatatgctgaggactgtgatggttacaacccctgatgatcttgtgccgatt
gtgtatctttcggccaataggattgccccggcgcacgaagggttggagcttggaattggg
gatgcttccataattaaggcgcttgccgaggcatttgggaggactgaggttcaggttaaa
aagcaataccaggttttgggagacttgggtcttgttgcgaaagcaagccgttcatctcaa
tctatgatgcgcaagcctgatgccttaactgttaccaaggtttttaatacattccagctc
attgctaaggaatctgggaaggatagtcaagagaagaaaaaaaaccatatcaagggacta
cttgttgctgccaccgattgtgagcctcaatatctaattcgtctacttcaggcaaagttg
cgtattggattggcagagcagactctattagctgcattgggtcaagctgctgtatatacc
caaaaagattctacaccacctccaaacatccagtctcctttagaagaggctgtgaagatt
gttaaacaagcatactctcttcttcctgtctatgataaaatagtccctgcgcttcttagt
ggtggtgtgtggaatctcccaaagacatgtaactttacacctggtgtcccagtcggacct
atgctagcaaagccaactaaaacggtacaggagattgtacgtaaatttcaggattctgag
tttacgtgtgaatataagtatgatggagaacgtgcccagatacattacatggataatggt
tcggttgagatatacagtcgaaatgctgaacggaacactggaaagtttcctgatgttgtc
attgcagtttcaaggttaaagaagtcatctgttagatcatttgttctggattgtgaactt
gttgcttataaccgtgaaaaacagattattcttcccttccagaccctcagcactcgagct
cgtaaaaatgtggatgtgagtgatatcaaggttgatgtttgcatatttgcttttgatatg
ttatatcttaatggccaaccgcttcttcaggaggaacttaaagttcgtagggagcatcta
tatggctcttttgaggaagaagctggattttttcagtttgcgactgcaataacatcaaat
gatttagatgaaatacagaaatttcaagacagtgcggttaatgcaagttgtgagggttta
attatcaaaacattgactaaagatgctacatacgagcctgcaaagcggtcacttaactgg
ctaaaattgaagaaagattacatggataatttaggggactcgctagatttggtacctatt
gctgctttctatggccgtgggaagcgtacaggtttctatggtgcctttctccttgcttgt
tatgacagcaataatgaagaatttcaaagcatttgtaaaataggcactgggttttctgaa
gaagtgcttgaaaaatgttctacaaatctcacttctaaagtgattcctgaaccaaagtcg
tactaccggtatgcagattcaatgaatccagatgtatggtttgaacccgctgaggtctgg
gaggtgaaagctgcagacttgaccattagccctgttcatcgtgctgcagttggcatagtg
gatccagataagggcatttctcttcgatttcctcggctgatgcgtgtccgtgaagataag
aaaccagaggaggccacatcatctgagcaggtggctgagatgtataattctcaaaagcac
aatcatcccaacgatcaagacgacgatgaagatgattga

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