Quercus lobata (valley oak): 115991580
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Entry
115991580 CDS
T07350
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB2
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
qlo
Quercus lobata (valley oak)
Pathway
qlo03022
Basal transcription factors
qlo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
115991580
09124 Replication and repair
03420 Nucleotide excision repair
115991580
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
qlo03021
]
115991580
03400 DNA repair and recombination proteins [BR:
qlo03400
]
115991580
Transcription machinery [BR:
qlo03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
115991580
DNA repair and recombination proteins [BR:
qlo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
115991580
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Motif
Other DBs
NCBI-GeneID:
115991580
NCBI-ProteinID:
XP_030971246
LinkDB
All DBs
Position
5:complement(39820790..39829802)
Genome browser
AA seq
452 aa
AA seq
DB search
MPEVKIIAKNFMDMVASLPAMKLDKLYDNAFICEAILRSLPPLAKKYVLQMLYIDSPITA
KSMEVWVLPDGSSKHRVAIDRLIQLRVFTETVDRRKETTYKINPTFQTNLQKLLTHGEVL
PREPMPSNITVRLPSVEELDVYAIGQWECFLLQLISSAQAERPSNISSSMMKVFQRGLLS
QRDKEAPRLTDSGFQFLLMDTNAQLWYIIREYISNSEERGVDPADLISFLLELSFHVTGE
AYNSNTLTEVQRNTVKDLTDLGLVKLQQGRKESWFIPTKLATNLSVSLTDSSSRKQGFVV
VETNFRLYAYSTSKLHCEILRLFSRVEYQLPNLIVGAITKESLYNAFENGITADQIISFL
QQNAHPRVAERIPTVPENVTDQIRLWESDLNRVEMNPAHYYDEFPSREIFEAACDHAREW
NGLLWEDSKRMRLVVKAEIHIHMRDHLRGQKQ
NT seq
1359 nt
NT seq
+upstream
nt +downstream
nt
atgccagaggtaaagataatagcgaagaatttcatggacatggtggcgtccttgccggcc
atgaagcttgacaagctctacgacaacgctttcatctgcgaagccattctcaggtctctg
ccacctttggccaagaagtatgttttacaaatgttatacattgattctccgataactgcc
aaatcaatggaggtgtgggtacttccagatgggtcctccaagcatagagttgccattgat
aggttgattcagttaagggtattcactgaaactgttgacaggagaaaggaaacaacttac
aaaatcaatccaacatttcagacaaacctccaaaagcttttaacacatggtgaagttttg
ccaagggaaccaatgccttctaacataaccgtgaggctcccaagcgtggaggaacttgat
gtgtatgccattggacaatgggagtgtttcttgctccaacttataagctcggctcaagct
gaaaggccatcgaatatcagctcttccatgatgaaagttttccagagaggccttttgagt
caaagggataaagaagctccgcgattaactgatagtggtttccagttcttgctgatggac
accaatgcacaactttggtacatcatcagagaatacatctctaattctgaggagcgaggt
gtggatccagctgatttaatttcattcctattagagcttagctttcatgtcaccggtgag
gcatataatagtaacacattgactgaagttcaaaggaatacggttaaggacctaacagac
ttggggttggtaaaacttcagcagggcaggaaagagagttggtttatacctactaaatta
gctaccaatctttcagtgagcttaacagattcatcatcacggaaacaaggatttgttgtt
gtggaaacaaattttaggttgtatgcgtactctacttcaaagttgcattgtgaaattcta
cgtcttttctcaagggtagagtatcaacttccgaatcttatagttggagcaatcacaaaa
gaaagtttgtataatgctttcgaaaatggtattacagcagatcagataatttcttttctt
cagcagaatgctcatcctcgcgtagcagagagaataccaactgtaccagaaaatgtcaca
gatcagattaggctgtgggaatcagatctgaatagggttgagatgaatcctgcacattat
tatgatgaatttccttctagggaaatttttgaggctgcttgtgaccacgcacgagagtgg
aatgggttgctatgggaggattcaaaacgtatgcgtcttgtggtcaaggcagaaatacac
atccatatgcgagaccatttacgtggtcaaaagcagtag
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