Quillaja saponaria (soapbark tree): O6P43_003723
Help
Entry
O6P43_003723 CDS
T09778
Name
(GenBank) DEAD-box ATP-dependent RNA helicase
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
qsa
Quillaja saponaria (soapbark tree)
Pathway
qsa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
qsa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
O6P43_003723
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
qsa03041
]
O6P43_003723
03009 Ribosome biogenesis [BR:
qsa03009
]
O6P43_003723
Enzymes [BR:
qsa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
O6P43_003723
Spliceosome [BR:
qsa03041
]
Complex A
U1 snRNP components
U1 related factors
O6P43_003723
Complex B
O6P43_003723
Ribosome biogenesis [BR:
qsa03009
]
Eukaryotic type
Pre-60S particles
Helicases
O6P43_003723
BRITE hierarchy
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
KAJ7980448
LinkDB
All DBs
Position
2
Genome browser
AA seq
1171 aa
AA seq
DB search
MATAEADPAALGPRYAPEDPTLPKPWKGLIDGSTGVLYYWNPETNITQYEKPAALPPPLP
PGPPPAASTPKLAPIPNARSMPPNGLLAQLGQQVMQTPQQQGQQVGHLSQQHVQTIEQQQ
SPIVAPSMHYQASQIAQAGQQHNSQSVQSMQHPGIMQQQLQHSNQQMPPQSNQQMQQQSG
QQVLQQMGQQMPPQGLQSQQFKQGTPHNQGSHIGQPQAHQFTHQHMHYFPYQQSMPLAGQ
HNSQQIQHNPPGQPFESQLEFKAALPKMEEMELQNGKQVGFSPSQFQQNIASSVQNNQKI
PSGISSGQMAHVGAHPGQTQQYGASLAPMQHSPAMLQSQQGGSDSVHQHGSRYQNQMGPA
MMLGQPSNVHPVGLKMGHEDNLHGRAGSEYYYNSNKEGPMPGPQQPNIAPLPIPRNQQDM
RISSAPFQNVMSGPGSGSSGVTGHAIHGMYNHALGGPSSLPSNSLSRPSYVGNSDVTDLS
PAEVYRQKHEVTATGDNIPAPFMTFDATGFPPEILREIYAAGFSTPTPIQAQTWPVALQC
RDIVAIAKTGSGKTLGYLMPAFMLLRQRRNNPQNGPTVLVLAPTRELATQIQDEAIKFSR
SSSFSCTCLYGGAPKAPQLKELDRGADIVVATPGRLNDILEMKKINFGQVSLLVLDEADR
MLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIASDLLVNPVQVNIGSVDELAANK
AITQYVELVPQMEKQRRLEQILRSQERGSKAIVFCSTKRLCDQLARSIGRSFGAAAIHGD
KSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGR
AGATGVSYTFVSEQDWKHAADLIKVLEGANQLVPPEIREMALRGPPNFVKDRSGMNRFDP
VSASGVSRWDSGGRSGMRDGGFSGRGGMRDGGFGGRGGMRDGGGFGGRGRDGSGFGGRGG
MRDGGFGGRGDFFSGRGNRGRGSGGPGGGHVGWDRSERGSYDRFNNLDGRGRGRGRGRFD
DRRDIANRSRGRSDSRSPERVRTWDRSRSRSRSRSRSWSRGRSRSRSWSRGRSFSRSRSR
SNSSGRSRDHRRSRSRIYDRYERRPPRVSKFDVRDPVMLTVEAPELAISQAPESAMSPMS
PGTQGNAILGAELLQQLPVVNSTESVHEDAV
NT seq
3516 nt
NT seq
+upstream
nt +downstream
nt
atggcaacggctgaggcagatccagctgctcttggtccacgttatgcacctgaagatcca
acactcccaaaaccctggaaaggtctgattgatggaagcacaggtgtgctatactactgg
aatcctgaaaccaacatcacccagtatgaaaaaccagctgctttacctccaccattgccg
cctgggccacctcctgctgcttccacccccaagctggctccaataccaaatgctcgttct
atgccacctaatggcttgttggctcagcttggacagcaagtaatgcaaaccccccagcaa
cagggtcagcaagttggtcacctttcccagcagcacgtgcaaactattgaacaacaacag
agtcccatagtagctcctagtatgcattaccaggcctcacagattgcacaagctggacaa
caacataattctcaatctgtacagtccatgcagcacccggggataatgcagcagcagctg
cagcactcgaatcagcaaatgccaccacaatcaaatcagcaaatgcaacaacagtcaggc
cagcaagtgctacaacagatggggcagcaaatgccaccacaaggtctccagtcccagcag
ttcaagcaaggaacaccacataatcaaggctcacatattggacaaccgcaagcccatcaa
tttactcatcagcacatgcattattttccttatcaacagagcatgcctctagcaggacag
cataattcacagcagattcaacacaatcccccggggcagccatttgaaagtcaactggag
tttaaagcagcattgccaaaaatggaggaaatggagcttcaaaatggtaagcaagttgga
ttttcgccatcccaatttcagcagaacattgcctcatctgttcagaacaatcagaagatt
cctagtggaatcagttcaggccaaatggctcatgtaggtgctcatcctggtcaaacacaa
cagtatggtgcctcgttggcccccatgcaacactctcccgctatgttacagtcacagcag
ggtggttctgattcagttcaccagcatggttctagatatcaaaatcagatgggccccgct
atgatgcttggccaaccatccaatgtgcatcctgttggcttaaagatgggtcacgaggat
aatttacatggtagagccgggagtgaatattattacaattctaacaaagaaggtccaatg
ccaggtcctcagcagccaaatattgcaccgttacccataccaagaaatcagcaggatatg
agaataagcagtgccccttttcaaaatgtcatgtctggtcctggtagtggatccagtggt
gtcacagggcatgccatccatggtatgtacaatcatgcattaggaggtccttcatccctt
ccaagtaactctttgtccaggccttcttatgttggaaattcagatgttaccgatctctca
cctgctgaagtttatcgtcagaaacatgaagttacagcaacgggtgacaatattccggcc
ccattcatgacatttgatgctaccgggttccctccagagattttgagagagatatatgct
gctggcttctcaactccaactccaatccaggctcagacatggccagttgcactacaatgc
agggacatagtggcaattgccaaaacaggctctggaaaaacattgggatatctgatgcct
gcattcatgcttcttagacagcggcgtaataaccctcagaacggtccaacagttttggtt
ttggctccaactcgagagcttgcgacacaaatccaagatgaggccattaagttcagccga
tcttcaagtttctcttgcacgtgcttgtatggtggagctccaaaagctcctcagctaaaa
gagttagatcgtggagcagatatagttgtggcaacgcctggtcggctcaatgacatactt
gagatgaagaagattaactttggtcaagtttctctgcttgtgcttgatgaggctgatcga
atgcttgatatgggttttgagcctcaaatccgtaagattgtgaatgaaatccccccacgt
agacaaactcttatgtatacagcaacatggccgaaagaagtaagaaaaattgcaagtgat
cttcttgttaaccctgtccaagttaacattggcagtgtcgatgagcttgccgcaaataaa
gctattacacagtacgttgaacttgtccctcaaatggagaagcagaggcgtctggagcaa
attctcagatcccaagagcgaggttctaaggccatagttttttgttccacaaagaggtta
tgtgatcagcttgctcgtagcattggacgtagctttggggctgctgcaattcatggagat
aaatcacaaggtgaaagagactgggtattaaatcagtttcggagcgggaagtcccctata
ctggttgccactgatgttgctgcccgtgggcttgacatcaaggatataagggtggtgatc
aactatgatttccctactgggatagaggactatgtacacagaattggaaggactgggagg
gctggtgctactggagtctcttacacttttgtctctgagcaggactggaaacatgcagct
gatttaataaaagttttggagggagccaaccagcttgtgccccctgagatacgggagatg
gctttgcgtgggccgcctaattttgtcaaggatcgaagtgggatgaaccgttttgaccct
gttagtgctagtggtgttagccgctgggactctggtggtcgtagtggcatgagggatggt
ggtttcagtggtcgtggtggcatgagggatggcggctttggtggtcgtggtggcatgagg
gatggcggtggttttggtggtcgtggtagggatggtagtggctttggtggtcgtggtggc
atgagagatggtggctttggtggcagaggtgatttcttttctggtcggggcaacagagga
cggggatctggtggccctggtgggggtcatgttggttgggatagaagtgaacgcggttca
tatgatcgattcaacaacttggatgggcgaggtagggggcgtggtcgtggacgatttgat
gatagaagagatattgctaataggagtagaggcagaagtgacagccgtagccctgaaaga
gttcgaacatgggatcgtagcagaagtcgtagtagaagcaggagtaggagttggagcagg
ggccgcagtcgaagccgtagctggtctcgtggccgtagcttcagccgtagtcggagtcgt
agtaacagtagtggtcggagccgtgaccaccgccgcagtagaagtcgcatctacgataga
tacgagaggaggcctccacgtgttagcaaatttgatgtaagagaccctgtgatgctgaca
gttgaagctcctgaattggcaatctctcaagctcctgaatcagcaatgtctcctatgtcc
ccaggcactcaaggcaacgcaattttgggtgctgagcttctccagcagttaccagtggtt
aatagtaccgagtcggtacatgaagatgctgtataa
DBGET
integrated database retrieval system
