Quillaja saponaria (soapbark tree): O6P43_005887
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Entry
O6P43_005887 CDS
T09778
Name
(GenBank) polyadenylation and cleavage factor-like 4-like
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
qsa
Quillaja saponaria (soapbark tree)
Pathway
qsa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
qsa00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
O6P43_005887
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
qsa03021
]
O6P43_005887
03019 Messenger RNA biogenesis [BR:
qsa03019
]
O6P43_005887
Transcription machinery [BR:
qsa03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
O6P43_005887
Messenger RNA biogenesis [BR:
qsa03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
O6P43_005887
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
Motif
Other DBs
NCBI-ProteinID:
KAJ7976061
UniProt:
A0AAD7Q717
LinkDB
All DBs
Position
3
Genome browser
AA seq
1084 aa
AA seq
DB search
MEMESSRRPFDRSRETGIKKPRLTGEIERVSNPNGRPFPQRPVASSVVNVVSSSRIRIND
RDLENEYQPQPPQYQELVTQYKTALAELTFNSKPIITNLTIIAGENLYAAKAVAATVCAN
IIEVPSEQKLPSLYLLDSIVKNIGRNYIKYFAARLPEVFCKAYRQVDPSVHSSMRHLFGT
WKGVFPPQSLQMIEKELRFNTAVNGSSAGATTLRTDSQSQRQPQSIHVNPKYLERQRIQQ
SSRAKGMANDGTVANLTEDAETLDGAASMSAGRPWVDRTNILHSHGDALNDPINEKSLAS
YGRNEYGSDLPRNPNSIGKTGGRGTELGHEKACYKAGSGVADTKSSQRNGLNIKHGLSDY
ETLKSTNVDARVQPIKSLTSIRGSGLSSSWKNSEEEEFMWDDMNSRLADHGPPNISSNSR
KDRWTPADVESLGIENHLEKVDGMHEVLSRVNRETSIDSLSAGDKQPTAFTHRSSKPLLL
KDSHWIDGVIQKSVDRQGYSSTGGGLSNSANPSVVRMGGRPQMGSSRVGASGVGLLKNAT
TGSAGIVEQQCFQSVGATSPSEQSPLRQRPSSPPLTAHHSQHQMRNFAELGYSQILKTSQ
FAGGLHNQSTQDSLPILPSNVQVGNLQRSQPKVLQASAPSTSSQSRQFHAFSQQKQLDSL
QSEGSDKTQKPPIQVNHGTRSKVANFTSDNSVSLDAESPEQSDASSLIAAVMKSGIFSNN
RISSSLPKTSLQEMGNRQSGVKSPLKSGQPPSQIPSSGMGVASPSSLGPSSKDNLSTSNT
SQTEVGQPPLPPSTVSSTSAPTSNSVTNAANPISNLLSSLVSKGLISAKKETLPRGSPEL
TRLQDQSQEITTSTSVPGSPNDAPSFPDPSTSNEVSIPDRAAKTSVMLPHPSTEEIKNLI
GFEFKPNKIRELHPDVIKNLYDYLPHCCSICHIRLKLQDQLDRHLQWHALRKPERDGVIG
ALKGWYADSRDLGAREAGFPSDFDSTDSVDDYAMDTDRGEPMVPAEENQCVCVLCGDLFE
DFYSQERDEWMFKGAIHMNMADCNDEIGSITCSAIKGPIVHAKCISESSLHDLVLSSSIK
MEHD
NT seq
3255 nt
NT seq
+upstream
nt +downstream
nt
atggaaatggaaagctcgcgtagaccatttgatagatccagagaaactggcataaagaaa
ccccgattgacaggggagatcgaacgtgtctcgaaccccaatggccgaccttttccgcag
agacctgtagcttcttctgtggttaatgtggtttcatcatcaaggattagaataaacgac
agagatttggaaaatgaataccagccgcagccaccacagtaccaagagcttgtaactcag
tataaaactgcacttgcagagctgactttcaattctaaaccaataatcaccaacttgact
ataattgctggcgaaaacctgtatgctgcaaaggcggttgctgcaactgtttgtgctaat
ataatagaggttcccagtgagcaaaagctgccatctctctatcttttggacagtattgta
aagaatatcgggaggaattatattaaatattttgctgctagattaccagaggtattttgc
aaggcatacagacaggttgatccttctgttcattcaagtatgcgacatctttttggaact
tggaaaggagtctttccccctcagtcacttcagatgattgagaaagaacttcgctttaat
actgcggtcaatggttcatctgcaggagctactacacttaggactgattcacagtcacaa
cgccagcctcaaagtatccatgtcaaccccaagtatttagaaaggcagcgaattcagcag
tctagcagggcaaaaggaatggctaatgatggcactgttgcaaacttgactgaagatgcg
gagacactggatggagctgccagtatgagtgctggacggccatgggtggatcgtactaac
attctgcattcacatggagatgcattaaatgatcctattaatgagaagagccttgcttct
tatggacgcaatgaatatggttctgacctcccaaggaatccaaatagtattggaaaaact
ggaggtaggggcactgagcttggacatgaaaaagcatgctacaaagctggtagcggagtt
gctgatacgaaatcaagccaaagaaatggtttaaatatcaaacatggtctttcagattac
gagacacttaaatccacaaatgtggatgcacgtgttcagccaataaagagccttacaagt
ataaggggcagcgggttatctagtagctggaaaaactcggaggaagaagagttcatgtgg
gatgatatgaactccagattggctgatcacggtccacctaatatttccagtaactcaagg
aaagatcggtggactcctgctgatgttgaaagtttgggaattgaaaatcaccttgagaaa
gtagatggtatgcatgaagttttgtcaagggtaaatagggaaacatccattgattctttg
tcggctggagacaaacaaccaactgcttttactcaccgttcatcaaaaccattgctattg
aaggattctcactggattgacggggtgattcaaaagtcggttgatcggcaaggctattca
tccactggtggtggattatcaaactcagcaaatccttctgtggtcaggatgggaggtcga
ccacagatgggctcatcacgtgttggagcctcaggtgttgggttactgaaaaatgcaaca
actggctccgctggcatagtggagcaacagtgttttcagtctgtgggagctacctctcca
tctgagcagtcacccttgcgtcagcgtccttcgtcacctccattaacagcccaccattcc
caacatcaaatgcgaaattttgctgagctgggatattcgcaaattcttaaaacatctcaa
ttcgcaggagggttgcataaccaatctactcaagactctctgcctatactgccttctaat
gttcaggtgggtaacttgcaaagatcacaaccaaaggtcttacaagcttcagcgccttca
acttcttctcagtcaaggcagtttcatgcattttcgcagcagaagcaattggactcattg
cagtctgaaggttctgataagactcagaagccacccatccaagtcaaccatggaactcgg
tcaaaagtcgcaaacttcacatctgacaattcagtgtctctagatgcagaaagtcctgaa
cagtctgatgcaagtagtttgatagcggcagttatgaagagtggtattttctctaacaat
agaatatccagtagcctacccaagacaagtttacaggaaatggggaaccgacaatcaggg
gttaagtcacccctgaaaagtgggcaacctccttcccagataccttcttcagggatgggg
gttgcatctccatcttcattaggtccttcttccaaggataacttatccacatctaataca
tctcaaacagaggtaggacaaccaccactaccgccctctactgtaagtagcacctcagca
ccaacttcaaattctgtaacaaatgctgcaaatccaatttccaaccttttgagttcatta
gtctcaaagggtttgatatctgcaaagaaagagacattgcctcgtgggtcacctgagctt
actcgactgcaagaccaaagccaagaaattacaaccagtacttctgtcccaggttctcca
aatgatgctccatccttccccgatccatctactagtaatgaagtatctattccagatcgt
gctgcaaaaacttctgtcatgttacctcatccaagcacggaagaaataaaaaacctcata
ggctttgagtttaagcctaataaaatccgagaattgcatccagatgtgataaaaaatctt
tatgattatcttcctcattgttgcagcatttgtcacattcgtcttaaacttcaggatcaa
cttgatagacacttgcagtggcatgctttgagaaagcctgaacgtgatggtgtaattggt
gcattgaaaggatggtatgcagactcaagagatttgggtgctagagaggctggatttcca
tctgattttgattctactgattctgtagatgattatgccatggatacagacaggggtgag
ccaatggttccagcagaagaaaatcagtgtgtgtgtgttttgtgtggtgatctttttgaa
gatttttacagtcaagaaagggatgaatggatgttcaaaggagctattcacatgaatatg
gcggattgcaatgatgagataggtagcattacttgcagtgctattaagggtcccattgtg
catgcaaaatgcatatcagaaagttcccttcatgacttagtgttatccagtagcattaaa
atggaacatgattaa
DBGET
integrated database retrieval system
