Quillaja saponaria (soapbark tree): O6P43_011889
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Entry
O6P43_011889 CDS
T09778
Name
(GenBank) polyadenylation and cleavage factor-like 4-like
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
qsa
Quillaja saponaria (soapbark tree)
Pathway
qsa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
qsa00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
O6P43_011889
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
qsa03021
]
O6P43_011889
03019 Messenger RNA biogenesis [BR:
qsa03019
]
O6P43_011889
Transcription machinery [BR:
qsa03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
O6P43_011889
Messenger RNA biogenesis [BR:
qsa03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
O6P43_011889
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
zf_UBZ
Motif
Other DBs
NCBI-ProteinID:
KAJ7967655
UniProt:
A0AAD7M0G4
LinkDB
All DBs
Position
5
Genome browser
AA seq
974 aa
AA seq
DB search
MDSEKLSHTRDPRILAFPGGRVGSASTTTKSVINEVGQKTASPILDKFKALLKQREDELR
VLDDEDVPPPSTEEIVQLYEVLLSELTFNSKPIITDLTIIAGEQKEHAKGIADAICARIL
EVSAEQKLPFLYLLDSIVKNISRDYGRYFSFCLPEVFCEAYWQVQPNLHQAMRHLFGTWS
AVFPTSVLRKIETQLHFSQAVNQQSSGLNPLRSSESPRPTHGIHVNPKYVRQLDRSVDNV
GAERLNSLTSAGHTSLGFVASNVHRSSTVRHERPMSPSRIGLERSLSSSVDEYAVESSNI
RVVDRESPSHAAFDFGVGKAIGRKDLTEWQRKPYSDDSRNHFESSTIHSLGNGHDRQNLR
ALIDAYGSDKSKGTSSNKHLLVERPDINVIDNKVPPTSWQNTEEEEFDWEDMSPTLLDQS
RNNDFLPSSVPILSARASTSRCLASQAQLPLLGDSSVAAEDAVTSLGLGHGSVVKASGFH
NEALSSHYSHDPWNVPHHLSRSFQHHFSSRGRARNLRVSPAIDNLPSADVKPYGLSVSTV
ASGMGSSGLESINIDARPSVAPASFGIRPPVNVHATHPPISNPIYPFQKHIRNQFESINA
NTTTVNEGPNKSLFMPEQQLDSFENKDLSMNKQPQLSYQHAGFISSTLQNRGHVTASQPQ
FFPWDVRESVPVSSTHFTQGPASQGHGASISTAMTNSLPVVQFPLTIPNIANNSFHFKGG
SLPPLPRGPPPPLSQMIPRQNASPVVSNQHSGGTYTGLISSLMAQGLISLTKQTPLQDSV
GIDLNPDALKLRRESAITSLYTDLPRQCTTCGLRFKCQEEHRSHMDWHVTRNRMSKNRKQ
KPPRKWFVSKSMWLSGAEALGTDAAPGFLATEAVEEKKDDEEVAVPADEDQNVCALCGEP
FDEFYSDETEEWMYKEAVYLNAPKGSMAGMDRSQLGPIVHAKCRSEPSEVTPDDFGQYEG
GTTEEGSQRKRMRN
NT seq
2925 nt
NT seq
+upstream
nt +downstream
nt
atggactcggaaaaattgtctcacacccgagaccctagaatcctagcgttccctggtggg
cgcgtaggctctgcgtcgaccaccacgaaatctgtgatcaatgaggttggccagaagaca
gcatctccaatactagataagttcaaggctttgttgaagcaaagggaagatgagctgagg
gttttggatgatgaagatgtgccaccgcctagcaccgaagaaattgtgcaactttatgag
gttctactctcggaactcaccttcaattcgaagcccattattacggatcttaccatcatt
gccggggagcagaaggagcacgccaagggcattgctgatgcaatttgtgctaggattctc
gaggtctcagctgagcaaaaacttcctttcctgtatctattggacagtattgtcaagaat
ataagccgggattatggtcgatacttctctttctgtctgcctgaagttttctgtgaggcg
tactggcaggttcagcctaatttgcatcaggctatgcgtcatctctttggcacttggtca
gcagtgtttccaacttccgttctacgcaagattgaaacacagctgcacttttctcaagct
gtcaatcaacagtcatctggattgaatccattgaggtcttcagaatctcctcgaccaact
cacggcatacacgttaatccaaaatatgtgcgtcagctggaccgttcagtggataatgtt
ggagcagaaagattgaactcattaactagtgcaggtcatacaagtttgggttttgtggct
agtaatgtccatcgatcttcaactgtcaggcatgaaagacccatgtcaccttcaagaata
ggacttgagaggtctttatcatcatcagttgatgaatatgcagtggaaagctctaatatt
agggttgttgatagggagtctccatcccatgctgcatttgattttggagttggtaaagca
attggcagaaaggatttgactgaatggcagagaaaaccgtattctgatgatagtcggaac
cattttgaaagttcgactatacatagcctcggtaatggtcatgatcgtcaaaatctaagg
gctttgattgatgcatatggaagtgacaaaagcaaaggaacttcaagcaataagcatttg
ttggttgaacgccctgatataaatgttatagacaacaaggtacctccaacctcatggcag
aatactgaagaggaagagtttgattgggaagatatgagtccaacactattagatcaaagt
aggaataatgatttcttgccctcgtctgtccctattctgagtgctagggcaagtaccagc
aggtgtttggctagtcaggcccagctacctttactaggtgattcttctgttgctgctgaa
gatgcagtcacctctttgggtttgggtcatggatcagttgttaaggcttctgggtttcac
aatgaggctctaagctcccattattcccatgatccctggaatgtgcctcatcatctgtct
agatctttccaacaccactttagctctagggggagagcaaggaatctccgggtatctcct
gctattgacaaccttcccagtgctgatgtaaaaccttatggtctctcggtctcaactgtt
gcctcgggaatgggttcttctggtcttgagtctattaatatagatgcccgtccatctgtt
gcacctgcatcatttgggataaggcctcctgtaaatgtgcatgctactcatccccccatt
tcaaaccctatttatccattccaaaaacatattaggaatcagtttgagtcaataaatgct
aatactaccactgtgaatgaaggtccaaataaatctttatttatgcctgagcagcagttg
gatagttttgaaaacaaagatctgagtatgaacaagcagccacagttgtcttatcagcat
gctgggtttatttcttcaaccctgcaaaaccgtggacatgtcactgcatcacagccgcaa
tttttcccttgggatgtacgcgaatctgtaccagtttcatcaacacactttactcaaggg
ccagcttcccaagggcatggtgcttcaataagtacagccatgacaaattcattacctgtt
gtacaattcccactaacaatcccaaacattgctaataactcattccattttaagggggga
tccttgccgcctttacctcgaggtccccctcctcctttgtcacaaatgatacctcgtcaa
aatgctagtccagttgtctccaaccaacactctggtggcacatatactggtttgattagt
tctctcatggctcaaggtttaatatcactgacaaaacaaacccctcttcaggattctgtt
ggaatcgatttaaatccagatgcgcttaagcttcgtcgtgagtctgcaattacttcttta
tatactgatctcccaagacaatgcacgacttgtggcttacgattcaagtgccaagaggag
catagaagccatatggattggcacgtgactaggaatcggatgtctaaaaaccgtaagcag
aagcctcctcgcaagtggtttgtaagtaaaagtatgtggcttagtggtgcagaggcactg
ggaactgatgctgcccctgggtttttggctactgaggcagtagaggaaaagaaggatgat
gaagaggtggctgtacctgctgatgaggatcagaatgtatgtgcactatgtggagaacct
tttgatgaattttacagcgatgaaacagaggaatggatgtataaagaagctgtctacttg
aatgcgcccaaaggatcaatggcaggcatggatagatcacagttaggtcccattgttcat
gctaaatgcaggtcagagcctagtgaggtcacccctgacgattttggacaatatgaaggg
ggtaccactgaagagggtagtcaaagaaaacgaatgcgtaattaa
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