Qipengyuania spongiae: L1F33_09745
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Entry
L1F33_09745 CDS
T08950
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
qsp
Qipengyuania spongiae
Brite
KEGG Orthology (KO) [BR:
qsp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
qsp03019
]
L1F33_09745 (hrpB)
Enzymes [BR:
qsp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
L1F33_09745 (hrpB)
Messenger RNA biogenesis [BR:
qsp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
L1F33_09745 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
HA2_N
Flavi_DEAD
AAA_30
AAA_19
ResIII
Motif
Other DBs
NCBI-ProteinID:
UVI38537
LinkDB
All DBs
Position
1951586..1954006
Genome browser
AA seq
806 aa
AA seq
DB search
MDSDLPIFAVLPDLLGALRERTGAVLVAPPGAGKTTAVAPALIGESWCEGQIILTSPRRV
AARASAERMAEMLGEKPGETVGYLTRLDSRTSAKTRILVMTEAIFVNRILDDPELGGVCA
VLFDEAHERHLDSDLGLALALETRAVLREDLRVVVMSATIDGARFARLLGPETPVIESAG
RAHPLRIEWLGSRPDQRIDESVAAAILTAWREEDGDILAFLPGVGEIERVRERLEARLPG
VPILPLHGQVEPAAQRLAIRRDGDGRRRIVLATAIAETSLTLDGVSVVVDSGLSRRAEYD
RAAGTTHLVTERASQAASAQRAGRAARQGPGVAYRLWEEGGHKGRPPYDPPEMAVADLSP
LVLKAAQWGSPPESLPFLDPAPEASLAAARGRLAALGALDGDDRLTEIGRKLAQLPLDPR
GSAMVLFGAHFEQAERAARLALLLQERKLGGPSEDLAARLDRWNADRSSRAEASRKLAKG
WAVQAAKLVDPEGARDVPLGAILAAGSPEFVAKRRDASGEAWLAGSGRGYVLDPASPLAR
SEFLVIGDAQGRAKGARITAALPLERSEAEEWLVDAIESRSTIAWSEGRVVARLERRLGA
IRLASVPDPAPDVGKVRDLLRDAALAQIDALLPADLLARARFTGIDALEPGTLRKNAELW
LDPLLENRRDLEIPRAALIEALLGLLDWDARQRLDRLAPRDFASPAGTSHAIDYTGDDAP
SVEVRAQALFGLDRHPMVGDTPLLLKLTSPAGRPVQATRDLPGFWRGSWADVRKDMKGRY
PKHRWPEEPWAEKPSLKTKNAFQRSQ
NT seq
2421 nt
NT seq
+upstream
nt +downstream
nt
atggacagcgaccttccgatattcgcggtcctgcccgacctgctcggggccctgcgcgag
cggactggcgcggtgctcgtcgctccgccgggggcgggcaagacgaccgcggtcgcgccg
gcgctgatcggcgagagctggtgcgaagggcagatcatcctcacctcgccgcgcagggtg
gcggcgcgtgcgtcggcggagcgaatggcggaaatgctcggcgaaaagccgggcgagacg
gtcggctacctcacccgcctcgacagccggacctcagcgaagacccgcatcctcgtcatg
accgaagcgattttcgtcaaccgcatcctcgacgatcccgaactcggcggcgtttgcgcc
gttctgttcgacgaggcgcatgagcggcatctcgacagcgatctcggcctcgcgctcgcg
ctggagacgcgcgccgtgctgcgcgaggatttgcgcgtggtggtcatgtccgcgacgatc
gacggcgcgcgctttgcccggcttctggggccggagacaccggtgatcgagagcgcgggc
agggcgcatcccctgcggatcgaatggctcggttcgcggccggaccagcgaatcgacgag
agcgtggccgccgccatcctgacggcatggcgcgaggaggatggcgacattctcgccttc
cttcccggcgtcggcgagatcgagcgggtgcgcgagcggctggaggcgcggctgccgggc
gtgccgatcctgccgctgcacggtcaggtcgaacccgcagcgcagcggctggcgatccgg
cgcgatggcgatgggcgtcgacggatcgtgctcgccaccgccatcgccgaaacgtcgctg
acgctcgacggcgtctcggtggtggtcgacagcggcctctctcgccgcgcggaatacgat
cgggcggcgggtactacgcatctcgtgacagagcgcgccagtcaggccgcatccgcccag
cgtgcaggccgcgcggcgcggcaagggccgggcgtcgcctatcgcctgtgggaggagggc
ggccacaaggggcgcccgccctacgatccgcccgagatggccgtggccgacctctcgccg
ctggttctgaaggcggcgcagtggggcagcccgcccgagagcctgcccttcctcgatccc
gcgcccgaagcctcgctggcggcggcgcgcgggcggctggcggcgctcggcgcgctcgat
ggcgatgatcgcctgaccgaaatcggacggaagctcgcacaattgccgcttgatccacga
ggcagcgcgatggtcctgttcggagcgcatttcgaacaggcggagcgcgcggcacggctc
gcgctgcttttgcaggagcgcaagctcggcggtccctcggaggatctggcagcaaggctc
gaccgctggaacgcggaccgctcgtcccgcgccgaagcctcgcgcaagctggcgaagggc
tgggccgtgcaggctgcgaagctggtcgatcccgaaggcgcgcgcgatgtgccgctcggc
gcgatccttgcagccgggagtccggaattcgtggcgaagcgccgcgatgcgagcggcgag
gcgtggctggcggggagcggacgcggttacgtgctggatccggcatcgcctctcgcgcgc
agcgaattccttgtcatcggagatgcgcagggccgggcgaaaggcgcgcggatcaccgct
gcgcttccgctcgaacgcagcgaggccgaggaatggctcgtcgatgcgatcgagagccga
agcactatcgcgtggagcgagggccgggtggtcgcccggctcgaacgacgactgggcgcg
atccgtctggccagcgtccccgatccagctcccgatgtcggcaaagtgcgcgatctcctt
cgcgatgcggcgctagcgcagatcgacgcgctgttacccgctgacctactggcgcgggcg
cggtttaccggcatcgatgcgctggaaccgggcaccctgcgcaagaacgcggaactctgg
ctcgatcccctgctcgagaaccgtcgcgacctcgaaattccgcgcgccgcgctgatcgag
gcgctgctgggcctgctcgactgggacgcgaggcagcggctcgatcggctcgccccgcgc
gacttcgcctcgcccgccggaacatcccacgcgatcgactataccggcgacgatgcgccc
agcgtcgaggtgcgcgcgcaggcgcttttcggcctcgaccggcatccgatggtcggcgat
accccgctgctgctcaagctgacgagcccggcaggacgcccggtgcaggcgacgcgcgac
ctgcccggtttctggcgcggcagctgggccgatgtgcgcaaggacatgaagggccgctat
cccaagcatcgctggcccgaggaaccctgggccgaaaagccgagtctgaagacgaagaac
gcctttcaacgctctcagtaa
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